View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8031_low_6 (Length: 464)
Name: NF8031_low_6
Description: NF8031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8031_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 2326264 - 2325830
Alignment:
| Q |
13 |
gagatgaattttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgttt |
112 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326264 |
gagatgaattttgaacgagggcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgttt |
2326165 |
T |
|
| Q |
113 |
ggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2326164 |
ggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatgatggggatgtgtggtgggctgggagggagg |
2326065 |
T |
|
| Q |
213 |
ggtacggtggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgttaccatcacgtaaaagtttt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2326064 |
ggtacggtggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgtttccatcacgtaaaagtttt |
2325965 |
T |
|
| Q |
313 |
attcaaatgatttactctttttacgtgatagtgtgtgtataaaccaaaggatggatgatgagaactaggggatatga-ttaataataactatggatggat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
2325964 |
attcaaatgatttactctttttacgtgatagtgtgtgtataaaccaaaggatggatgatgagaactaggggatatgatttaataataagtatggatgg-- |
2325867 |
T |
|
| Q |
412 |
atatagtgtgtgcgcgaaaggtggtgagacatgtatt |
448 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2325866 |
atatagtgtgtgcgcgaaaggtggtgagacatgtatt |
2325830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 2320402 - 2320125
Alignment:
| Q |
21 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
120 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| ||||| |||| |||||||||||| || ||||||| | | ||||||||||||||||||||||||||| |
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| T |
2320402 |
ttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttggcatgga |
2320303 |
T |
|
| Q |
121 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggaggggtacggt |
220 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||| ||||| |||| | | || ||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
2320302 |
gagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtgtagagggccgggagggaggggtacggt |
2320203 |
T |
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| Q |
221 |
ggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgttaccat |
298 |
Q |
| |
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|||||||||| ||||||| |||||| ||| |||||||||||||| || |||| ||||||||||||||||||| |||| |
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| T |
2320202 |
ggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagcgtaacgaggacgatgaaccatgtttccat |
2320125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 2302701 - 2302411
Alignment:
| Q |
21 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
120 |
Q |
| |
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|||||||||||| | ||||||||||||||| |||| |||| |||||||||||| || ||||| | ||| ||||||||||||||||||||||||||| |
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| T |
2302701 |
ttttgaacgagaacatggtgggccagagcatggtcatcgatgaaaatggaaggtcgagaaccgatgtggagagtgatgataggaccatgtttggcatgga |
2302602 |
T |
|
| Q |
121 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggaggggtacggt |
220 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||| | || ||| || ||| ||||||||||||||| |||| ||||||| ||||||||| |
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| T |
2302601 |
gagttttgagaaaaggttcaagttgggaggatggttttcggagcaactgaatgtttgtgaggatggggatgtgtggagggccaggagggaagggtacggt |
2302502 |
T |
|
| Q |
221 |
ggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgttaccatcacgtaaaagttt |
311 |
Q |
| |
|
|||||||||||||| |||||| || || ||||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
2302501 |
ggttgtgaaggaggcaagaatgactccgatgaggaagatgatgcagagagtaatgaggacaatgaaccatgtttccattgtgtaaaagttt |
2302411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 2293088 - 2292812
Alignment:
| Q |
15 |
gatgaattttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttgg |
114 |
Q |
| |
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||||| |||||||||||| | ||||||||||||| | ||||| ||| |||||||||||| || ||||||| | | ||||||||||||||||||||| |
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| T |
2293088 |
gatgagttttgaacgagaacatggtgggccagagtatggtcgttaatgaaaatggaaggtcgagaaccgatatggacagtgatgataggaccatgtttgg |
2292989 |
T |
|
| Q |
115 |
catggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggagggg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| | | || ||||||||||||||||| | |||| |||||||||||| |
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| T |
2292988 |
catggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtgtagagggccgggagggagggg |
2292889 |
T |
|
| Q |
215 |
tacggtggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatg |
291 |
Q |
| |
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|| |||||||||||| ||||||| |||||| ||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
2292888 |
tatggtggttgtgaataaggagaggatggctctgataaggaagatgatgcaaagagtaacgaggacaatgaaccatg |
2292812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 2309413 - 2309141
Alignment:
| Q |
21 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
120 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| ||||| |||| ||||||||||| || ||||||| | | ||||||||||||||||||||||||||| |
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| T |
2309413 |
ttttgaacgagaacatggtgagccagagcatggtcgttgatgaaaatggaaggttgagaaccgatatggacaatgatgataggaccatgtttggcatgga |
2309314 |
T |
|
| Q |
121 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggaggggtacggt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||| |||| | | || ||||||||||||||||| | |||| ||||||||||||||| || |
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|
| T |
2309313 |
gagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtgtagagggccgggagggaggggtacagt |
2309214 |
T |
|
| Q |
221 |
ggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgtt |
293 |
Q |
| |
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|||||||||| ||||||| |||||| ||| |||||||||||||| ||||||| |||||| |||||||||||| |
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| T |
2309213 |
ggttgtgaagaaggagagcatggctctgataaggaagatgatgcagagagtaacgaggactatgaaccatgtt |
2309141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 2329971 - 2329768
Alignment:
| Q |
21 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2329971 |
ttttgaacgagagcgtggtgggccagagcacggtcggcgatgaaaatggaaggtcgagaaccgatattaagattgatgataggaccatgtttggcatgaa |
2329872 |
T |
|
| Q |
121 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggaggggtacggt |
220 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||| || || |||||||| | || ||||||| | |||| |
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|
| T |
2329871 |
gagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgattggtatatgtggtggaccaggggggagggttgcggt |
2329772 |
T |
|
| Q |
221 |
ggtt |
224 |
Q |
| |
|
|||| |
|
|
| T |
2329771 |
ggtt |
2329768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 2350271 - 2350068
Alignment:
| Q |
21 |
ttttgaacgagagcgtggtgggccagagcacggtcggagatgtaaatggaaggtctggagccgatattaagattgatgataggaccatgtttggcatgga |
120 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||||||| |||||||||||| | | | ||| || ||| ||||||||||||||| ||||| |||| |
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|
| T |
2350271 |
ttttgaacgagagcgtggtgggcgagagtatggtcggagatgaaaatggaaggtcggtaactgattttgagagtgatgataggaccatatttggtgtgga |
2350172 |
T |
|
| Q |
121 |
gagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttatgatgatggggatgtgtggtgggctgggagggaggggtacggt |
220 |
Q |
| |
|
| ||||||| ||||||||| |||||||| ||||||||||||||||| | || ||| |||| |||||||| || ||||| | ||||||||||| | |||| |
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| T |
2350171 |
gggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggatatgcggtggaccgggagggagggttgcggt |
2350072 |
T |
|
| Q |
221 |
ggtt |
224 |
Q |
| |
|
|||| |
|
|
| T |
2350071 |
ggtt |
2350068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 337
Target Start/End: Complemental strand, 2329739 - 2329642
Alignment:
| Q |
241 |
tggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgttaccatcacgtaaaagt-tttattcaaatgatttactctttttacg |
337 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| || || |||||||||||||| |||| |||||||||| || || ||| | ||||||||||||||| |
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|
| T |
2329739 |
tggctctgatgaggaagatgatgcagagagaaacaagtgcgatgaaccatgtttccattacgtaaaagtgttgatgcaactactttactctttttacg |
2329642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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