View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8032_high_1 (Length: 474)
Name: NF8032_high_1
Description: NF8032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8032_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Complemental strand, 8288492 - 8288051
Alignment:
| Q |
15 |
aagaaaagaatgagaaaaacacgtgaccccaaattcctcaaactcaaattaagcataccatattcacagtaacactcttcccctctctcaatttcattgt |
114 |
Q |
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| T |
8288492 |
aagaaaagaatgagaaaaacacgtgaccccaaattcctcaaactcaaattaagcatagcatattcacagtaacactcttcccctctctcaatttcattgt |
8288393 |
T |
|
| Q |
115 |
tatgatcgagatcgaaattgaaatgacgaaaggaaaccctcaaacgacatcgtttcgccgtgaactcaaaccagaacaatatttacacagtccagttcat |
214 |
Q |
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| T |
8288392 |
tatgatcgagatcgaaatcgaaatgacgaaaggaaaccctcaaacgacatcgtttcgccgtgaactcaaaccagaacaatatttacacagtccagttcat |
8288293 |
T |
|
| Q |
215 |
tacgccgtcgcaatcggaaaccattcaacactttctagaatcatctcaaccgttccgcgtttacccgacccgactcaaatccacactgaatccgattcac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
8288292 |
tacgccgtcgcaatcggaaaccattcaacactttctagaatcatctccaccgttccgcgtttacccgacccgactcaaatccatacggaatccgattcac |
8288193 |
T |
|
| Q |
315 |
tctctcaagagaaactcgctgatcaaatctccgctgtactcgaccgccgtgatgttccattacatgaaacgccactccatctcgctgttcgtcttaacga |
414 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8288192 |
tctctcaagagaaactcgccgatcaaatctccgctgtactcgaccgccgtgatgttccattacgtgaaacgccactccatctcgctgttcgtcttaacga |
8288093 |
T |
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| Q |
415 |
cgtctccgccgcaaaactccttgcctctgccggtgctgatgt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8288092 |
cgtctccgccgcaaaactccttgcctctgccggtgctgatgt |
8288051 |
T |
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