View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8032_low_2 (Length: 272)
Name: NF8032_low_2
Description: NF8032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8032_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 41704382 - 41704623
Alignment:
| Q |
18 |
aaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggc |
117 |
Q |
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| T |
41704382 |
aaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggc |
41704481 |
T |
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| Q |
118 |
ctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgnnnnnnnngcaataaccactattgagacaaccaag |
217 |
Q |
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| T |
41704482 |
ctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaatgaaaaaaaagcaataaccactattgaaacaaccaag |
41704581 |
T |
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| Q |
218 |
ctggttttccatttggattctctcttgtaccttacacaggtt |
259 |
Q |
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| T |
41704582 |
ctggttttccatttggattctctcttgtaccttacacaggtt |
41704623 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 1440620 - 1440672
Alignment:
| Q |
82 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagt |
134 |
Q |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagt |
1440672 |
T |
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