View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8032_low_3 (Length: 249)
Name: NF8032_low_3
Description: NF8032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8032_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 38396262 - 38396477
Alignment:
| Q |
16 |
atataagtgacatatttacatcatggtattgttttgcttgctattgttagtttgttcaccaagggtacaaaacattccttaggtttctggtcatgctagg |
115 |
Q |
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| T |
38396262 |
atataagtgacatatttacatcatggtattgttttgcttgctattgttagtttgttcaccaagggtacaaaacattccttaggtttctggtcatgctagg |
38396361 |
T |
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| Q |
116 |
aaatttatacttgtctatttatatgagtaggctgtgcataatttatcaaatataacatttagtgtacttgctttaatttgttttcctattaggagtttaa |
215 |
Q |
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| T |
38396362 |
aaatttatacttgtctatttatatgagtaggctgtgcataatttatcaaatatagtatttagtgtacttgctttaatttgttttcctattaggagtttaa |
38396461 |
T |
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| Q |
216 |
atctgactgtattgat |
231 |
Q |
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| T |
38396462 |
atctgactgtattgat |
38396477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 56074422 - 56074528
Alignment:
| Q |
19 |
taagtgacatatttacatcatggtattgttttgcttgctattgttagtttgttcaccaagggtacaaaacattccttaggtttctggtcatgctaggaaa |
118 |
Q |
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| T |
56074422 |
taagtgacatatttaccgcatgagattgtttcgcttgttattgttactgtgttcattaatggtagaaaaccttccttaggtttctggtcacgctagggaa |
56074521 |
T |
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| Q |
119 |
tttatac |
125 |
Q |
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| T |
56074522 |
attatac |
56074528 |
T |
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