View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8032_low_5 (Length: 208)
Name: NF8032_low_5
Description: NF8032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8032_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 14233476 - 14233647
Alignment:
| Q |
19 |
atctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactcaaa |
118 |
Q |
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| T |
14233476 |
atctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactcaaa |
14233575 |
T |
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| Q |
119 |
tagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
190 |
Q |
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| T |
14233576 |
tagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
14233647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 9880718 - 9880819
Alignment:
| Q |
89 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
188 |
Q |
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|||| |||||||| |||||| |||||| | ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| || |
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| T |
9880718 |
tgaattgaatgagtttataggttactctgacagtgattggtgtggagatttgactgacagaagaagcacctcaggctatgttttcaagttcaatgattct |
9880817 |
T |
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| Q |
189 |
tc |
190 |
Q |
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|| |
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| T |
9880818 |
tc |
9880819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 9880631 - 9880694
Alignment:
| Q |
19 |
atctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttg |
84 |
Q |
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| T |
9880631 |
atctcatttgatagctgctaagagaatccttagatacatcaagggtaata--tggaatttggtttg |
9880694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 5722090 - 5721989
Alignment:
| Q |
87 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
186 |
Q |
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||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
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| T |
5722090 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
5721991 |
T |
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| Q |
187 |
ct |
188 |
Q |
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|| |
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| T |
5721990 |
ct |
5721989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 18645860 - 18645759
Alignment:
| Q |
87 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
186 |
Q |
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||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
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| T |
18645860 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
18645761 |
T |
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| Q |
187 |
ct |
188 |
Q |
| |
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|| |
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|
| T |
18645760 |
ct |
18645759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 34982781 - 34982829
Alignment:
| Q |
89 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagat |
137 |
Q |
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|||||| |||||||| |||| ||||||| ||||||| |||||||||||| |
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| T |
34982781 |
tgaagttaatgagctcataggttactcagatagtgattggtgtggagat |
34982829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 44536634 - 44536535
Alignment:
| Q |
89 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
188 |
Q |
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||||||||||||||| |||| || ||| | ||||| |||||||||||| | ||||| || ||||||| |||| ||||| ||||| |||||||||||| |
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| T |
44536634 |
tgaagtgaatgagctcataggatattcagacagtgattggtgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgct |
44536535 |
T |
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