View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8033_low_1 (Length: 469)
Name: NF8033_low_1
Description: NF8033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8033_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 36528718 - 36529160
Alignment:
| Q |
12 |
agcagagaccaagtagtagtaattggagattatcaaatagattgtgtttgtttgactaaaaagttgagaaagaaattttgttatgttaatcttcttagtg |
111 |
Q |
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| T |
36528718 |
agcagagaccaagtagtagtaattggagattatcaaatagactgtgtttgtttgactaaaaagttgagaaagaaattttgttatgttaatcttttaagtg |
36528817 |
T |
|
| Q |
112 |
ttgaagatgcaaacgtttctgctagtaatgaaggtggtgaagctaaagaggaagaaaaagatgttaaagtaactataaattcaacagaaaatttatcggt |
211 |
Q |
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| T |
36528818 |
ttgaagatgcaaacgtttctgctagttatgaaggtgatgaagctaaagaggaagaaaaagatgttgaagtaaccataaattcaacagaaaattcatcggt |
36528917 |
T |
|
| Q |
212 |
tgtttgtaattgtgagaaaaattatcctccaccttgtcccttgtattacatagttgatcatgaaccataccctagtagttgttctatccaatgaaaatat |
311 |
Q |
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| T |
36528918 |
tgtttgtaattgtgagaaaaattatcctccaccttgtcccttgtattacatagttgatcatgagccataccctagtagttgctctatccaatgaaaatat |
36529017 |
T |
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| Q |
312 |
aatgtgtcactatgataaatatttcaatgtttaaatttcaataatttaag-ttcttaatttgatatggttttttatgttacgaagagatcattacatgat |
410 |
Q |
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||||||| |||||||| || |||| ||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36529018 |
aatgtgttactatgatcaacattttaatgtttaaatttaaagaatttaagtttcttaatttgatatggttttttatgttacgaagagatcattacatgat |
36529117 |
T |
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| Q |
411 |
tagtagttagcacgaaaagtacgatgtatttgggtgaaatcag |
453 |
Q |
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| T |
36529118 |
tagtagttagcacgaaaagtacgatgtatttgggtgaaatcag |
36529160 |
T |
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