View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8033_low_2 (Length: 377)
Name: NF8033_low_2
Description: NF8033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8033_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 51043952 - 51044316
Alignment:
| Q |
1 |
aggggtctatatcttctctctctgttagataatctgccaatttaatcaagtcccatacctgccagatcaaggaacaatagtataatacatcatttctaaa |
100 |
Q |
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| T |
51043952 |
aggggtctatatcttctctctctgttagataatctgccaatttaatcaagtcccatacctgccagatcaaggaacaatagtataatacatcatttctaaa |
51044051 |
T |
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| Q |
101 |
ccaaagtaatcatggttcaaattgcgctaatgctttcatcgatggagatacaggtcaaccaaatcatttggggcacaaagtggctaagttaaacaacaaa |
200 |
Q |
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| T |
51044052 |
ccaaagtaatcatggttcaaattgcgctaatgctttcatcgatggagctacaggtcaaccaaatcatttggggcacaaagtggctaagttaaacaacaaa |
51044151 |
T |
|
| Q |
201 |
gtagcatgataaacaaggaaggaatttaccgtgtcatatatgaatggcatggtgtctccggttttccatgcggatataagagcctattatttttacccca |
300 |
Q |
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| T |
51044152 |
gtagcatgataaacaaggaaggaatttaccgtgtcatatatgaatggcattgtgtctccggttttccatgcggatataagagcctattatttttacccca |
51044251 |
T |
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| Q |
301 |
agagtgaaccaacaaaagtgaaaaacaaattattagttttgaatatatatagggactactgatgt |
365 |
Q |
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| T |
51044252 |
agagtgaaccaacaaaagtgaaaaacaaattatcagttttgaatatatatagggactacttatgt |
51044316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 51036036 - 51036374
Alignment:
| Q |
1 |
aggggtctatatcttctctctctgttagataatctgccaatttaatcaagtcccatacctgccagatcaaggaacaatagtataatacatcatttctaaa |
100 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| | |
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| T |
51036036 |
aggggtctgcatcttctctctgtgttagataatctgccaatttaatcaagtcccatacctgccaggtcaagga--------ataatacacagtttctgag |
51036127 |
T |
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| Q |
101 |
ccaaag-taatcatg-gttcaaattgcgctaatgctttcatcgatggagatacaggtcaaccaaatcatttggggcacaaagtgg-ctaagttaaacaac |
197 |
Q |
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||||| ||||| || ||||||| ||||||||||| | | | | |||| ||||||||||| ||||| ||||||||||| || ||||||||||| |
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| T |
51036128 |
tcaaagttaatcgtgagttcaaactgcgctaatgccacgaactacaaaactacatgtcaaccaaataatttgaagcacaaagtggtctcagttaaacaac |
51036227 |
T |
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| Q |
198 |
aaagtagcatgataaacaaggaaggaatttaccgtgtcatatatgaatggcatggtgtctccggttttccatgcggatataagagcctattatttttacc |
297 |
Q |
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|||| ||||| ||| | ||||| ||| | |||||||||||||||||||||||| |||||||| ||||||| || || |||| ||||| | |||||||| |
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| T |
51036228 |
aaagcagcataatacataaggagggactataccgtgtcatatatgaatggcattgtgtctccagttttcc--gcagaaataatagcctgtattttttacc |
51036325 |
T |
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| Q |
298 |
ccaagagtgaacca--acaaaagtgaaaaacaaattattagttttgaat |
344 |
Q |
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| || | ||||| |||||||||||||| ||||||| |||||||||| |
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| T |
51036326 |
gcgaggggtaaccaagacaaaagtgaaaaataaattatcagttttgaat |
51036374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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