View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8033_low_4 (Length: 327)
Name: NF8033_low_4
Description: NF8033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8033_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 50667623 - 50667934
Alignment:
| Q |
1 |
ttaatgagacagtgcaaaatgctgaatttgatggtaaaattggttgttggaggttgaagagttttaatagtaaagctgatgtaacaacagaatatatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50667623 |
ttaatgagacagtgcaaaatgctgaatttgatggtaaaattggttgttggaggttgaagagttttaatagtaaagctgatgtaacaacagaatatgtttg |
50667722 |
T |
|
| Q |
101 |
tcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggcatacaagtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50667723 |
tcgttggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggcatacaagtttg |
50667822 |
T |
|
| Q |
201 |
tataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatgcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50667823 |
tataaaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatgcta |
50667922 |
T |
|
| Q |
301 |
ctccttctcttg |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50667923 |
ctccttctcttg |
50667934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 105 - 308
Target Start/End: Complemental strand, 888595 - 888392
Alignment:
| Q |
105 |
tggttgatcgtagcgaccggtgagaatgccgaagctgttgtgcctaatattgaaggcgtagatgaatttggaggagttataaggcatacaagtttgtata |
204 |
Q |
| |
|
||||||||||| || ||||| |||||||| || || ||||| || | |||||||| || ||||| |||| || ||| |||||||| |||||||||| |
|
|
| T |
888595 |
tggttgatcgttgcaaccggagagaatgctgaggcggttgtacccgagattgaaggagttgatgagtttgttggtagtattaggcatactagtttgtata |
888496 |
T |
|
| Q |
205 |
aaagtggtgaagagtttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatgctactcc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
888495 |
aaagtggtgaagagtttagagggaagaaagttttggttgttggatgtggaaattcaggtatggaagtttgtttggatctttgtaatcatgatgctgctcc |
888396 |
T |
|
| Q |
305 |
ttct |
308 |
Q |
| |
|
|||| |
|
|
| T |
888395 |
ttct |
888392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 29857545 - 29857478
Alignment:
| Q |
219 |
tttagagggaagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | | |||||||| |
|
|
| T |
29857545 |
tttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttg |
29857478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 17408131 - 17408189
Alignment:
| Q |
240 |
gttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatgc |
298 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||| | | ||||||||||||||| |||| |
|
|
| T |
17408131 |
gttgttggatgtggaaattctggcatggaagtttctcttgatctttgtaaccataatgc |
17408189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 32790064 - 32790135
Alignment:
| Q |
228 |
aagaaagttttggttgttggttgtggtaattctggtatggaagtttgtttagatctttgtaaccatgatgct |
299 |
Q |
| |
|
||||| |||||||| || || ||||| ||||| |||||||| ||||||||||| ||||| |||||| ||||| |
|
|
| T |
32790064 |
aagaatgttttggtggtggggtgtggaaattcaggtatggaggtttgtttagacctttgcaaccataatgct |
32790135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University