View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8033_low_5 (Length: 293)
Name: NF8033_low_5
Description: NF8033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8033_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 51043530 - 51043778
Alignment:
| Q |
17 |
aaatagtaggagcaataactaaagcaaagcaaaaaacacgtgaaatacaagaaatttcagaaacaatacatcatcgtaccttcaaaaactggcttaatac |
116 |
Q |
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| T |
51043530 |
aaatagtaggagcaataactaaagcaaagcaaaaaacacgtgaaatacaagaaatttcagaaacaatacatcatcgtaccttcaaaaactggcttaatac |
51043629 |
T |
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| Q |
117 |
tgtcaactcgagcctgccacttatcgttgtctatggcccatcgaaatccctgcaaatatatgatgtgaaagtgttgaaattgttgtttcagaagcacatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51043630 |
tgtcaactcgagcctgccacttatcgttgtctatggcccatcgaaatccctgcaaatatatgatgtgaaagtgttgaaattgttgtttcagaagcacatc |
51043729 |
T |
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| Q |
217 |
ttgttaaatataatcctcattcaataattcaatgtcacctgaacaccaa |
265 |
Q |
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| T |
51043730 |
ttgttaaatataatcctcattcaataattcaatgtcacctgaacaccaa |
51043778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 51035720 - 51035864
Alignment:
| Q |
22 |
gtaggagcaataactaaagcaaagcaaaaaacacgtgaaat--acaagaaatttcagaaacaatacatcatcgtaccttcaaaaactggcttaatactgt |
119 |
Q |
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||||||||||||||||||||||||||| ||||||||||| | ||| |||||| ||||||||||| || ||||||||||||| ||||| ||||||| |
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| T |
51035720 |
gtaggagcaataactaaagcaaagcaattaacacgtgaaaggaaaaaggaatttctcaaacaatacattataataccttcaaaaacaggctttatactgt |
51035819 |
T |
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| Q |
120 |
caactcgagcctgccacttatcgttgtctatggcccatcgaaatc |
164 |
Q |
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| T |
51035820 |
caactcgagcctgccacttatcattgtctatggcccatcgcaatc |
51035864 |
T |
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