View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8033_low_6 (Length: 292)
Name: NF8033_low_6
Description: NF8033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8033_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 50667621 - 50667346
Alignment:
| Q |
1 |
ccgtggcctaataccaaaactccctgcataatcttccaagtactttatgaactgttgttttgaagggtatgttgggaaattagaggggaattccataaag |
100 |
Q |
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| T |
50667621 |
ccgtggcctaataccaaaactccctgcataatcttccaagtactttatgaactgttgttttgaagggtatgttgggaaatttgaggggaattccataaag |
50667522 |
T |
|
| Q |
101 |
ggtaattcacagaattgttttggaagatgaagacgtaatcgatcgtaggttttgagttgccataatgaagccacacaattagatctttctagtattacac |
200 |
Q |
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| T |
50667521 |
ggtaattcacagaattgttttggaagatgaagacgcaatcgatcgtaggttttgagttgccataatgaagccacacaattagatctttctagtattacac |
50667422 |
T |
|
| Q |
201 |
atggaatgnnnnnnngttgtagacatgcagctgctgccaaaccagaaggtcctgctcctacgatcaccggtccttg |
276 |
Q |
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| T |
50667421 |
atggaatgtttttttgttgtagacatgcagctgctgctaaaccagaaggtcctgctcctacgatcaccggtccttg |
50667346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 888783 - 888903
Alignment:
| Q |
86 |
gggaattccataaagggtaattcacagaattgttttggaagatgaagacgtaatcgatcgtaggttttgagttgccataatgaagccacacaattagatc |
185 |
Q |
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||||||||||| || || | ||||| | ||||||||| | ||||||||| | |||||||||||||| || | ||||| |||||| | |||||| |||| |
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| T |
888783 |
gggaattccattaaaggaagctcacaaacttgttttggtaaatgaagacgaagacgatcgtaggtttttagcttccatagtgaagctatacaatttgatc |
888882 |
T |
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| Q |
186 |
tttctagtattacacatggaa |
206 |
Q |
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| T |
888883 |
tttctagtattaaacttggaa |
888903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 32789714 - 32789638
Alignment:
| Q |
113 |
aattgttttggaagatgaagacgtaatcgatcgtaggttttgagttgccataatgaagccacacaattagatctttc |
189 |
Q |
| |
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||||| |||||||||||||| | ||||| ||| || |||||||||||||| | |||||| | |||||||| |||||| |
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| T |
32789714 |
aattgctttggaagatgaagccttaatctatcataagttttgagttgccacattgaagctaaacaattagctctttc |
32789638 |
T |
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