View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8034_high_12 (Length: 213)

Name: NF8034_high_12
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8034_high_12
NF8034_high_12
[»] chr5 (5 HSPs)
chr5 (16-196)||(38845224-38845404)
chr5 (134-177)||(1102130-1102173)
chr5 (83-177)||(29922839-29922934)
chr5 (134-175)||(10859886-10859927)
chr5 (111-175)||(10373449-10373513)
[»] chr2 (1 HSPs)
chr2 (135-184)||(37402272-37402321)
[»] chr7 (2 HSPs)
chr7 (85-175)||(45369109-45369200)
chr7 (104-175)||(21436046-21436118)
[»] chr3 (2 HSPs)
chr3 (79-157)||(190776-190854)
chr3 (134-175)||(49634087-49634128)
[»] chr6 (1 HSPs)
chr6 (80-172)||(33141757-33141850)
[»] chr4 (3 HSPs)
chr4 (135-184)||(24921484-24921533)
chr4 (114-170)||(2174258-2174314)
chr4 (83-170)||(25318992-25319080)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 38845224 - 38845404
Alignment:
Q  16 atatgtgtgcgtgtttggattcatttttgggagagtcaaa-gtgattctctgtagtgttaaaacttaaaattgattttcatatgtttggtgttctcgatt 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38845224 atatgtgtgcgtgtttggattcatttttgggagagtcaaaagtgattctctgtagtgttaaaacttaaaattgattt-catatgtttggtgttctcgatt 38845322  T
Q  115 agaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttgccttcaaacatggttatgacatgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38845323 agaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttgccttcaaacatggttatgacatgt 38845404  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 1102130 - 1102173
Alignment:
Q  134 gaattgattttaacttgaatctagaatttgtagcttttgccttc 177  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||    
T  1102130 gaattgattttaacttgaagctaggatttgtagcttttgacttc 1102173  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 29922839 - 29922934
Alignment:
Q  83 aattgattttcatatgtttggt-gttctcgattagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttgccttc 177  Q
    |||||||||| | ||||||||| ||||||||  |||| ||||||| |||   ||||||||||||||||||| ||| || | |||||||||| ||||    
T  29922839 aattgattttgacatgtttggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaagctaaaaatcgtagcttttggcttc 29922934  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 10859927 - 10859886
Alignment:
Q  134 gaattgattttaacttgaatctagaatttgtagcttttgcct 175  Q
    ||||||||| ||||||||| |||||||||| |||||||||||    
T  10859927 gaattgattctaacttgaagctagaatttggagcttttgcct 10859886  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 10373449 - 10373513
Alignment:
Q  111 gattagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttgcct 175  Q
    |||||||| ||| ||| ||| | ||||||||| |||||||||  ||| |||||||||||||||||    
T  10373449 gattagaattgaatttttctctagaattgattataacttgaagttaggatttgtagcttttgcct 10373513  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 37402321 - 37402272
Alignment:
Q  135 aattgattttaacttgaatctagaatttgtagcttttgccttcaaacatg 184  Q
    |||||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  37402321 aattgactctaacttgaagctagaatttgtagcttttgacttcaaacatg 37402272  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 45369109 - 45369200
Alignment:
Q  85 ttgattttcatatgtttgg-tgttctcgattagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttgcct 175  Q
    |||||||| | |||||||| ||||||| | ||||| |||||||   | | ||||||||||||||||||| |||||||| | |||||||||||    
T  45369109 ttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttgaagctagaattcggagcttttgcct 45369200  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 21436118 - 21436046
Alignment:
Q  104 tgttctcgattagaaatgattttatctatggaattgattttaacttgaatctagaa-tttgtagcttttgcct 175  Q
    ||||||||| ||||| | |||||| ||   ||||||||||||||||||| |||||| |||| |||||||||||    
T  21436118 tgttctcgagtagaatttattttacctcgagaattgattttaacttgaagctagaattttggagcttttgcct 21436046  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 190776 - 190854
Alignment:
Q  79 ttaaaattgattttcatatgtttggtgttctcgattagaaatgattttatctatggaattgattttaacttgaatctag 157  Q
    |||||||||||||| ||| |||||| ||||  | ||| || ||||||| ||| | ||||||||||||||||||| ||||    
T  190776 ttaaaattgattttgatacgtttggggttcctggttataattgattttgtctttagaattgattttaacttgaagctag 190854  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 49634128 - 49634087
Alignment:
Q  134 gaattgattttaacttgaatctagaatttgtagcttttgcct 175  Q
    ||||||||| ||||||||| |||| |||||||||||||||||    
T  49634128 gaattgattctaacttgaagctaggatttgtagcttttgcct 49634087  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 33141850 - 33141757
Alignment:
Q  80 taaaattgattttcatatgtttgg-tgttctcgattagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttttg 172  Q
    ||||||||||||| |||||||||| || |||| | || || |||||||| ||   ||||||||| ||||| ||| |||||||||| ||||||||    
T  33141850 taaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaactagaacctagaatttgaagcttttg 33141757  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 24921533 - 24921484
Alignment:
Q  135 aattgattttaacttgaatctagaatttgtagcttttgccttcaaacatg 184  Q
    |||||||| ||||||||| || |||||||||||||||| ||||| |||||    
T  24921533 aattgattctaacttgaaacttgaatttgtagcttttgacttcatacatg 24921484  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 2174314 - 2174258
Alignment:
Q  114 tagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttt 170  Q
    ||||| ||||||| |||  |||||||||| ||||| ||| |||||||||||||||||    
T  2174314 tagaattgattttgtctccggaattgattgtaactagaaactagaatttgtagcttt 2174258  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 25318992 - 25319080
Alignment:
Q  83 aattgattttcatatgtttggt-gttctcgattagaaatgattttatctatggaattgattttaacttgaatctagaatttgtagcttt 170  Q
    |||||||||| | ||||||||| | |||||| ||||| ||||||| |||   ||||||||| |||||||||  ||| ||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

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