View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8034_high_3 (Length: 396)
Name: NF8034_high_3
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8034_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 38844813 - 38845170
Alignment:
| Q |
16 |
atgaatgatgagttttctagggttttgagtcagcagatggagtatttctctagtgatccgaatgctgataggattaatcggcttaaaggtgaaatgtctc |
115 |
Q |
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| T |
38844813 |
atgaatgatgagttttctagggttttgaatcagcagatggagtatttctctagtgatccgaatgctgataggattaatcggcttaaaggtgaaatgtctc |
38844912 |
T |
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| Q |
116 |
aggtagtagttatgttcttcttttttgtggattttgattagttgaaattgattttgcttctgatagattgaattataagtgattagttgaaaatttgaat |
215 |
Q |
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| T |
38844913 |
aggtagtagttatgttcttcttttttgtggattttgattagttgaaattgattttgcttctgatagattgaattataagtgattagttgaaaatttgaat |
38845012 |
T |
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| Q |
216 |
ttacacggtttaattagaagatgttacttgaatttgaactcaattttaatctgatctagtttacaaaattaaatgtata-tttggattgacgttgagttt |
314 |
Q |
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| T |
38845013 |
ttacacggtttaattagaagatgttacttgaatttgaactcaattttaatctgatctagtttacaaaattaaatgtatattttggattgacgttgagttt |
38845112 |
T |
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| Q |
315 |
tgagaaatcactgtggaaatgtgattttgtgaaaccctaatctaatgtgtagcttttg |
372 |
Q |
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| T |
38845113 |
tgagaaatcactgtggaaatgtgattttgtgaaactctaatctaatgtgtagcttttg |
38845170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19065195 - 19065137
Alignment:
| Q |
16 |
atgaatgatgagttttctagggttttgagtcagcagatggagtatttctctagtgatcc |
74 |
Q |
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| T |
19065195 |
atgaatgatgagttttcaagggttttgcatcagcaaatggagtttttttctagtaatcc |
19065137 |
T |
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