View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8034_low_1 (Length: 570)
Name: NF8034_low_1
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8034_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 10 - 553
Target Start/End: Complemental strand, 28264901 - 28264358
Alignment:
| Q |
10 |
gaagaatatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
109 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264901 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctg |
28264802 |
T |
|
| Q |
110 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264801 |
ggatggtgccatgataaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
28264702 |
T |
|
| Q |
210 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264701 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28264602 |
T |
|
| Q |
310 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
409 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264601 |
taatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
28264502 |
T |
|
| Q |
410 |
ggaaccttaggctatatggctccggaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264501 |
ggaaccttaggctatatggctccggaatatataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaa |
28264402 |
T |
|
| Q |
510 |
ctggaaagaaagctgttcaagttatgaaggaacaaggtgaagat |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28264401 |
ctggaaagaaagctgttcaagttatgaaggaacaaggtgaagat |
28264358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Original strand, 28288835 - 28289361
Alignment:
| Q |
10 |
gaagaatatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
109 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| | |
|
|
| T |
28288835 |
gaagaaaatatcaagagggtcaagacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctctta |
28288934 |
T |
|
| Q |
110 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
28288935 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttctt |
28289034 |
T |
|
| Q |
210 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
||| |||||| || |||||||| ||||| ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
28289035 |
ggagtgtaagacataaaatagctcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaag |
28289134 |
T |
|
| Q |
310 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
409 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28289135 |
taatgttatgctagattctagtttcaatgttaagcttggtgactttgggttggctaaactaatggatcatgagattggaccccaaacaacagtggttgcc |
28289234 |
T |
|
| Q |
410 |
ggaaccttaggctatatggctccggaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaa |
509 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
28289235 |
ggaaccttaggctatttggctccagaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggagatcacaa |
28289334 |
T |
|
| Q |
510 |
ctggaaagaaagctgttcaagttatga |
536 |
Q |
| |
|
||||| |||||||||| ||||||||| |
|
|
| T |
28289335 |
ctggacggaaagctgttgaagttatga |
28289361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 523
Target Start/End: Complemental strand, 28294716 - 28294203
Alignment:
| Q |
10 |
gaagaatatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
28294716 |
gaagaaaatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttg |
28294617 |
T |
|
| Q |
110 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
28294616 |
ggttggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28294517 |
T |
|
| Q |
210 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
|| |||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28294516 |
ggggtgtaaggcacaaaatagctcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatattaaatcaag |
28294417 |
T |
|
| Q |
310 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
409 |
Q |
| |
|
|||||||||| | || || ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||| || |||||||| | | | ||| |
|
|
| T |
28294416 |
taatgttatgttagactcaagtttcaatgtcaagcttggtgattttgggttggctaagttaatggaccatgaacttgggccgcaaacaactgggctggcc |
28294317 |
T |
|
| Q |
410 |
ggaaccttaggctatatggctccggaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaa |
509 |
Q |
| |
|
||||| || |||||| | |||||||||||| | || ||||||| ||| || ||||||||||||||||||||||||||| | ||||| ||||| || | | |
|
|
| T |
28294316 |
ggaacatttggctatctagctccggaatatgtgagcacaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagataacta |
28294217 |
T |
|
| Q |
510 |
ctggaaagaaagct |
523 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
28294216 |
ctggtaagaaagct |
28294203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 28304918 - 28304441
Alignment:
| Q |
10 |
gaagaatatatcaagaggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctg |
109 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
28304918 |
gaagaaaatatccagagggtcaagacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctctta |
28304819 |
T |
|
| Q |
110 |
ggatggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttcctt |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
28304818 |
ggctggtgccatgacaaaggtgagtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttctt |
28304719 |
T |
|
| Q |
210 |
ggattgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
|| |||||||||||||||| | ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28304718 |
ggggtgtaaggcacaaaataactcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaag |
28304619 |
T |
|
| Q |
310 |
taatgttatgcttgattctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgcc |
409 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||| || ||||| || | | | ||| |
|
|
| T |
28304618 |
taatgttatgctagattcaagttttaatgttaagcttggtgattttgggttggctaaattaatggaccatgaacttgggcctcaaacgacggggctggcc |
28304519 |
T |
|
| Q |
410 |
ggaaccttaggctatatggctccggaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggg |
487 |
Q |
| |
|
||||| || |||||| | ||||| |||||| | |||||||| | ||| || |||||||||||||| |||||||||||| |
|
|
| T |
28304518 |
ggaacattcggctatctagctccagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttatagttttggg |
28304441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 26 - 540
Target Start/End: Original strand, 28278986 - 28279500
Alignment:
| Q |
26 |
ggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgaca |
125 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||| | | ||||||| | |||||||||||| | | || ||||||||||| | |
|
|
| T |
28278986 |
ggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaa |
28279085 |
T |
|
| Q |
126 |
aaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaa |
225 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| | ||||||| |||||| | |||||||||| |
|
|
| T |
28279086 |
aaggtgagtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttcttggagtctaaggcacaa |
28279185 |
T |
|
| Q |
226 |
aatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaatgttatgcttgat |
325 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
28279186 |
aatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagat |
28279285 |
T |
|
| Q |
326 |
tctagtttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgccggaaccttaggctata |
425 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||| |||| || |||||||||||| |||| ||||||||||| ||| |
|
|
| T |
28279286 |
tctagtttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgagcttgggcctcaaacaacagtgattgctggaaccttaggatatt |
28279385 |
T |
|
| Q |
426 |
tggctccggaatatataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgt |
525 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| | |||||| ||| ||||||||| |||||| || |
|
|
| T |
28279386 |
tggctccagaatatataagtacaggtaaggctagcaaagaatctgatgtctatagctttggggttgtcgtcttggagatcacaactggaaggaaagccgt |
28279485 |
T |
|
| Q |
526 |
tcaagttatgaagga |
540 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
28279486 |
tgaagttatggagga |
28279500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 357
Target Start/End: Complemental strand, 28342110 - 28341866
Alignment:
| Q |
113 |
tggtgccatgacaaaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttgga |
212 |
Q |
| |
|
||||| ||||| ||| ||||| || ||||||||||||| | |||||| ||||| |||||||||| |||| ||||||||||| || ||| |||||| |
|
|
| T |
28342110 |
tggtgtcatgaaaaaagtgagcttttacttgtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaaaggggtgatgcttacttgga |
28342011 |
T |
|
| Q |
213 |
ttgtaaggcacaaaatagcacttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaa |
312 |
Q |
| |
|
||||||| ||||||||||| | || | || || | | |||||| |||||||||| ||||| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
28342010 |
gtgtaaggtacaaaatagcattaggtatagcatcatctcttctttatttacatgaagagtgggaacaatgtgtagtgcatagagatattaagtcaagtaa |
28341911 |
T |
|
| Q |
313 |
tgttatgcttgattctagtttcaatgttaagcttggtgactttgg |
357 |
Q |
| |
|
||| ||| | ||| | | |||||||| ||| |||||||| ||||| |
|
|
| T |
28341910 |
tgtaatgttagatgcaaatttcaatgctaaacttggtgattttgg |
28341866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 43363694 - 43363761
Alignment:
| Q |
290 |
catagggatattaaatcaagtaatgttatgcttgattctagtttcaatgttaagcttggtgactttgg |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||| | |||||||| |||||||||||||||||| |
|
|
| T |
43363694 |
catagggatataaaatcaagtaatgttatgttgtattcaaatttcaatgctaagcttggtgactttgg |
43363761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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