View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8034_low_2 (Length: 440)

Name: NF8034_low_2
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8034_low_2
NF8034_low_2
[»] chr1 (5 HSPs)
chr1 (11-368)||(34828136-34828501)
chr1 (110-181)||(11681873-11681944)
chr1 (359-418)||(38742390-38742448)
chr1 (360-418)||(23321254-23321312)
chr1 (366-418)||(8984850-8984902)
[»] chr2 (1 HSPs)
chr2 (110-187)||(13148368-13148445)
[»] chr3 (6 HSPs)
chr3 (368-418)||(37975968-37976018)
chr3 (360-416)||(28206973-28207029)
chr3 (359-417)||(46596085-46596142)
chr3 (363-400)||(19110936-19110973)
chr3 (367-416)||(28208155-28208204)
chr3 (362-402)||(3820735-3820775)
[»] chr7 (2 HSPs)
chr7 (133-187)||(36651040-36651094)
chr7 (382-418)||(9554268-9554304)
[»] scaffold0227 (1 HSPs)
scaffold0227 (373-418)||(24946-24991)
[»] chr8 (1 HSPs)
chr8 (110-187)||(15216428-15216505)
[»] chr6 (3 HSPs)
chr6 (15-44)||(9369449-9369478)
chr6 (382-418)||(12322811-12322847)
chr6 (366-418)||(33485084-33485136)
[»] chr5 (1 HSPs)
chr5 (373-418)||(40433995-40434039)
[»] chr4 (2 HSPs)
chr4 (356-401)||(41325557-41325602)
chr4 (382-418)||(29249718-29249754)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 34828136 - 34828501
Alignment:
Q  11 cacattcttcaaatcaatgaaaactaaatgcaagnnnnnnnnatatgttcgatgtctctccatcatacgtcgaagtaggtagatcgcttctataatcgtc 110  Q
    ||||||||||||||||||||||||||| ||| ||        |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |    
T  34828136 cacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtcgaagtaggtagatcgcttctataatcgac 34828235  T
Q  111 ---------ataaaatcaaattgaatattgataactcaagtctctttccttagtcttctcacaatcatcctttcccataacttcatatatgatatatcac 201  Q
             |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  34828236 ctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcctttcccataacttcatatatgatatatcac 34828335  T
Q  202 aatgtaattaattattgagatataacaaagcgacatcatgttaaaatacgattgaaaagactacannnnnnnnnnataatttcagtttatagtcgtcatt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||    
T  34828336 aatgtaattaattattgagatataacaaagcgacatcatgttaaaatacgattgaaaagactaca-tttttttttataatttcagtttatagtcgtcatt 34828434  T
Q  302 atttagcttctttcattaatgttttccattcaattcaaggcaaatataatgatcatattaaaaaata 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34828435 atttagcttctttcattaatgttttccattcaattcaaggcaaatataatgatcatattaaaaaata 34828501  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 11681944 - 11681873
Alignment:
Q  110 cataaaatcaaattgaatattgataactcaagtctctttccttagtcttctcacaatcatcctttcccataa 181  Q
    ||||||| ||| |||| ||| | |||||||||||||||| |||||||||| | |||||| ||||||||||||    
T  11681944 cataaaaccaatttgattatcggtaactcaagtctcttttcttagtcttcgctcaatcaccctttcccataa 11681873  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 38742448 - 38742390
Alignment:
Q  359 ttaaaaaatagggataatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||||| | |||| |||||||| ||||||| |||||||||||||| ||||||||||||||    
T  38742448 ttaaaagaaagggttaatagagctttaccc-cctgtaatatagggtacttttgattttgc 38742390  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 23321254 - 23321312
Alignment:
Q  360 taaaaaatagggataatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||| ||||||| |||||||  |||| ||||||||||||||||| ||||||| ||||||    
T  23321254 taaataatagggttaatagatctttatcctcctgtaatatagggcacttttggttttgc 23321312  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 8984850 - 8984902
Alignment:
Q  366 atagggataatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||||| ||||||||||||| || | |||||||||||  ||||||||||||||    
T  8984850 atagggttaatagagttttagccccatgtaatataggccacttttgattttgc 8984902  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 13148445 - 13148368
Alignment:
Q  110 cataaaatcaaattgaatattgataactcaagtctctttccttagtcttctcacaatcatcctttcccataacttcat 187  Q
    |||||||||||||||  ||| |||||||| ||||||||| ||||||||||   |||||| ||||||||||||||||||    
T  13148445 cataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccctttcccataacttcat 13148368  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 37975968 - 37976018
Alignment:
Q  368 agggataatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||| |||||||||||||||| |||||||||||||| ||||||| ||||||    
T  37975968 agggttaatagagttttacccccctgtaatatagggtacttttggttttgc 37976018  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 28206973 - 28207029
Alignment:
Q  360 taaaaaatagggataatagagttttaccctcctgtaatatagggaacttttgatttt 416  Q
    |||||| ||||| |||||| | |||||||||||||||||||||| ||||||| ||||    
T  28206973 taaaaattagggttaatagggctttaccctcctgtaatatagggcacttttggtttt 28207029  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 46596085 - 46596142
Alignment:
Q  359 ttaaaaaatagggataatagagttttaccctcctgtaatatagggaacttttgattttg 417  Q
    |||||| |||||| |||||||| ||||||| |||||||||||||| ||||||| |||||    
T  46596085 ttaaaagatagggttaatagagctttaccc-cctgtaatatagggtacttttggttttg 46596142  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 19110936 - 19110973
Alignment:
Q  363 aaaatagggataatagagttttaccctcctgtaatata 400  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  19110936 aaaatagggttaatagtgttttaccctcctgtaatata 19110973  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 28208204 - 28208155
Alignment:
Q  367 tagggataatagagttttaccctcctgtaatatagggaacttttgatttt 416  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||    
T  28208204 tagggttaatagagctttacccccctgtaatatagggcacttttggtttt 28208155  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 3820775 - 3820735
Alignment:
Q  362 aaaaatagggataatagagttttaccctcctgtaatatagg 402  Q
    |||||||||| |||||| | |||||||||||||||||||||    
T  3820775 aaaaatagggttaatagtgctttaccctcctgtaatatagg 3820735  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 36651094 - 36651040
Alignment:
Q  133 taactcaagtctctttccttagtcttctcacaatcatcctttcccataacttcat 187  Q
    |||||| |||||| || |||||||||||  |||||| ||||||||||||||||||    
T  36651094 taactcgagtctcctttcttagtcttctttcaatcaccctttcccataacttcat 36651040  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 9554304 - 9554268
Alignment:
Q  382 tttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  9554304 tttaccctcctgtaatatagggcacttttggttttgc 9554268  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 24991 - 24946
Alignment:
Q  373 taatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||||||| ||||||| | |||||||||||| ||||||||||||||    
T  24991 taatagagctttacccccttgtaatatagggtacttttgattttgc 24946  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 15216428 - 15216505
Alignment:
Q  110 cataaaatcaaattgaatattgataactcaagtctctttccttagtcttctcacaatcatcctttcccataacttcat 187  Q
    ||||||| |||||||| |||  ||||||  ||||||||| |||||||||| | |||| | |||||| |||||||||||    
T  15216428 cataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccctttcgcataacttcat 15216505  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 9369449 - 9369478
Alignment:
Q  15 ttcttcaaatcaatgaaaactaaatgcaag 44  Q
    ||||||||||||||||||||||||||||||    
T  9369449 ttcttcaaatcaatgaaaactaaatgcaag 9369478  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 12322847 - 12322811
Alignment:
Q  382 tttaccctcctgtaatatagggaacttttgattttgc 418  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  12322847 tttacccccctgtaatatagggcacttttgattttgc 12322811  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 33485136 - 33485084
Alignment:
Q  366 atagggataatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    |||||| ||| |||| ||||||| |||||||||||||| ||||||| ||||||    
T  33485136 atagggttaacagagctttacccccctgtaatatagggtacttttggttttgc 33485084  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 40433995 - 40434039
Alignment:
Q  373 taatagagttttaccctcctgtaatatagggaacttttgattttgc 418  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  40433995 taatagacttttacc-tcctgtaatatagggcacttttgattttgc 40434039  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 41325602 - 41325557
Alignment:
Q  356 atattaaaaaatagggataatagagttttaccctcctgtaatatag 401  Q
    ||||||||||| |||| |||||| ||||||||| ||||||||||||    
T  41325602 atattaaaaaaaagggttaatagtgttttacccccctgtaatatag 41325557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 29249754 - 29249718
Alignment:
Q  382 tttaccctcctgtaatatagggaacttttgattttgc 418  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  29249754 tttacccccctgtaatatagggaacttttggttttgc 29249718  T

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