View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8034_low_4 (Length: 281)
Name: NF8034_low_4
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8034_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 30448269 - 30448007
Alignment:
| Q |
1 |
agttcgtgtgaatgttaacaatatgttggaaggaaatttggacttaacccttcgttgccaatccaaagatgatgatctcggaaaacaacttctacatcat |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30448269 |
agttcatgtgaatgttaacaatatgttggaaggaaatttggacttaacccttcgttgccaatccaaagatgatgatctcggaaaacaacttctgcatcat |
30448170 |
T |
|
| Q |
101 |
ggacaaagctttagttggaaatttagtcctagatttcctccaannnnnnnccaaacactatacttctgttcctttgcatggaccggtgaatttcatcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30448169 |
ggacaaagctttagttggaaatttagtcctagatttcctccaatttttttccaaacactatacttctgttcctttgcatggaccggtgaatttcatcatt |
30448070 |
T |
|
| Q |
201 |
ttgatatatacgtacagggtgttgaaaaactagataactgtgattattgtaattggaatgtat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
30448069 |
ttgatatatacgtacagggtgttgaaaaactagataattgtgattattgcaattggaatgtat |
30448007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 30459830 - 30459568
Alignment:
| Q |
1 |
agttcgtgtgaatgttaacaatatgttggaaggaaatttggacttaacccttcgttgccaatccaaagatgatgatctcggaaaacaacttctacatcat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||| |||||||| |||||| |
|
|
| T |
30459830 |
agttcgtgtgaatgttaacaacatgttggaaggaaatttggacttaacccttcattgcaaatccaaagaggatgatcttggagttcaacttctgcatcat |
30459731 |
T |
|
| Q |
101 |
ggacaaagctttagttggaaatttagtcctagatttcctccaannnnnnnccaaacactatacttctgttcctttgcatggaccggtgaatttcatcatt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
30459730 |
ggtcaaagctttagttggaaatttagtcctagatttcctccgattttgttccaaacactttacttttgttcctttgcatggaccagtgaatcccatcatt |
30459631 |
T |
|
| Q |
201 |
ttgatatatacgtacagggtgttgaaaaactagataactgtgattattgtaattggaatgtat |
263 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
30459630 |
ttgatatatacatacagggtgttcgcaatttagataattgtgattattgcaattggaatgtat |
30459568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 25728632 - 25728592
Alignment:
| Q |
38 |
ttggacttaacccttcgttgccaatccaaagatgatgatct |
78 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
25728632 |
ttggacttaacccttcattgcaaatctaaagatgatgatct |
25728592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University