View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8034_low_6 (Length: 272)

Name: NF8034_low_6
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8034_low_6
NF8034_low_6
[»] chr6 (35 HSPs)
chr6 (4-256)||(31284487-31284739)
chr6 (15-256)||(26623186-26623449)
chr6 (15-256)||(26729164-26729427)
chr6 (4-134)||(26861812-26861942)
chr6 (4-134)||(28786477-28786607)
chr6 (4-134)||(28792598-28792728)
chr6 (15-128)||(27214630-27214743)
chr6 (15-128)||(27234485-27234598)
chr6 (151-227)||(26623636-26623712)
chr6 (151-227)||(26729613-26729689)
chr6 (15-61)||(28098300-28098346)
chr6 (72-134)||(28234830-28234892)
chr6 (72-133)||(28181381-28181442)
chr6 (72-133)||(28227217-28227278)
chr6 (4-52)||(27592960-27593008)
chr6 (72-134)||(26937373-26937435)
chr6 (14-56)||(26949870-26949912)
chr6 (72-134)||(28185633-28185695)
chr6 (72-134)||(28297571-28297633)
chr6 (72-134)||(28325744-28325806)
chr6 (72-134)||(28514440-28514502)
chr6 (4-134)||(28781338-28781468)
chr6 (11-52)||(27610942-27610983)
chr6 (11-52)||(27677554-27677595)
chr6 (11-52)||(27679152-27679193)
chr6 (11-52)||(27706342-27706383)
chr6 (11-52)||(27718319-27718360)
chr6 (11-52)||(27724785-27724826)
chr6 (88-124)||(25580002-25580038)
chr6 (88-124)||(26056209-26056245)
chr6 (88-124)||(26076179-26076215)
chr6 (34-134)||(27337923-27338023)
chr6 (34-134)||(27398663-27398763)
chr6 (4-52)||(27698434-27698482)
chr6 (82-134)||(28098215-28098267)
[»] scaffold0277 (1 HSPs)
scaffold0277 (11-134)||(4529-4652)
[»] scaffold0038 (3 HSPs)
scaffold0038 (72-134)||(34992-35054)
scaffold0038 (72-133)||(27715-27776)
scaffold0038 (72-134)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (3-177)||(28127481-28127655)
[»] chr2 (1 HSPs)
chr2 (78-134)||(3279976-3280032)
[»] scaffold0349 (2 HSPs)
scaffold0349 (11-52)||(3361-3402)
scaffold0349 (11-52)||(14296-14337)
[»] chr4 (1 HSPs)
chr4 (65-134)||(5090806-5090875)
[»] scaffold0019 (1 HSPs)
scaffold0019 (78-134)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 31284487 - 31284739
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284487 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 31284586  T
Q  104 tactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284587 tactcaagcagctaacttgtctggcgaccatcgttctcctgggtagccttcttcacttcaatcttgttttgccttcttcaatttttattcctcaatcatt 31284686  T
Q  204 ccatataaatgcttaaaagggaaacattttttatttatatatttaaacaaata 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284687 ccatataaatgcttaaaagggaaacattttttatttatatatttaaacaaata 31284739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 26623186 - 26623449
Alignment:
Q  15 agttatggagaagcattggctaagcatgaagagaggttccaacataata---cagatcatatggaaaggttgcaaaaatggaagatagctcttactcaag 111  Q
    |||||||| |||||| | |||||||||| | ||||||||||  ||||||   || || ||||||| ||||||||||||||||||||||||||| | ||||    
T  26623186 agttatggcgaagcacttgctaagcatgcaaagaggttccataataataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaag 26623285  T
Q  112 cagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgcc----------------ttcttcaatttttattcct 195  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||                |||||||||| |||||||     
T  26623286 cagctaacttgtctggagaccatcgtcatcctgggtagcctacttcacttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccc 26623385  T
Q  196 caatcattccatataaatgcttaaaagggaaac---attttttatttatatatttaaacaaata 256  Q
    |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  26623386 caatcattccatattaatgcttaaaagggaaacacaattttttgtttatatatttaaacaaata 26623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 26729164 - 26729427
Alignment:
Q  15 agttatggagaagcattggctaagcatgaagagaggttccaacataata---cagatcatatggaaaggttgcaaaaatggaagatagctcttactcaag 111  Q
    |||||||| |||||| | |||||||||| | ||||||||||  ||||||   || || ||||||| ||||||||||||||||||||||||||| | ||||    
T  26729164 agttatggcgaagcacttgctaagcatgcaaagaggttccataataataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaag 26729263  T
Q  112 cagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgcc----------------ttcttcaatttttattcct 195  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||                |||||||||| |||||||     
T  26729264 cagctaacttgtctggagaccatcgtcatcctgggtagcctacttcacttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccc 26729363  T
Q  196 caatcattccatataaatgcttaaaagggaaac---attttttatttatatatttaaacaaata 256  Q
    |||||||||||||| ||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  26729364 caatcattccatattaatgcttaaaagggaaacacaattttttgtttatatatttaaacaaata 26729427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 26861812 - 26861942
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 103  Q
    |||||||||||| |||||| ||||||||||||||||||||| | ||||| ||| || |||  ||| | ||||| |||||||| | ||||||  | |||||    
T  26861812 atcatagaggtatttatggtgaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctct 26861911  T
Q  104 tactcaagcagctaacttgtctggcgaccat 134  Q
     |  ||||| ||||||||||| ||| |||||    
T  26861912 gaaccaagctgctaacttgtcaggctaccat 26861942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 28786477 - 28786607
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 103  Q
    |||||| |||| ||||||| ||||||||||||  ||||||| ||||||| ||| || |||  ||| | ||||| ||||||||  |||||||| | |||||    
T  28786477 atcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctct 28786576  T
Q  104 tactcaagcagctaacttgtctggcgaccat 134  Q
     || ||||| ||||||||||| ||| |||||    
T  28786577 gacccaagctgctaacttgtccggctaccat 28786607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 28792598 - 28792728
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 103  Q
    |||||| |||| ||||||| ||||||||||||  ||||||| ||||||| ||| || |||  ||| | ||||| ||||||||  |||||||| | |||||    
T  28792598 atcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctct 28792697  T
Q  104 tactcaagcagctaacttgtctggcgaccat 134  Q
     || ||||| ||||||||||| ||| |||||    
T  28792698 gacccaagctgctaacttgtccggctaccat 28792728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 27214630 - 27214743
Alignment:
Q  15 agttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcag 114  Q
    |||||||| |||||  | |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |    
T  27214630 agttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctg 27214729  T
Q  115 ctaacttgtctggc 128  Q
    ||||||| ||||||    
T  27214730 ctaacttatctggc 27214743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 27234598 - 27234485
Alignment:
Q  15 agttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcag 114  Q
    |||||||| |||||  | |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |    
T  27234598 agttatggtgaagcgcttgctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctg 27234499  T
Q  115 ctaacttgtctggc 128  Q
    ||||||| ||||||    
T  27234498 ctaacttatctggc 27234485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 26623636 - 26623712
Alignment:
Q  151 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 227  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26623636 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26623712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 26729613 - 26729689
Alignment:
Q  151 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 227  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26729613 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26729689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 28098346 - 28098300
Alignment:
Q  15 agttatggagaagcattggctaagcatgaagagaggttccaacataa 61  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||    
T  28098346 agttatggtgaagcattagctaagcatgaagagaggttccaaaataa 28098300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 28234830 - 28234892
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  28234830 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 28234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 28181381 - 28181442
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 133  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28181381 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 28181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 28227217 - 28227278
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 133  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28227217 atggataggttgcagaaatggaagatggctcttactcaaactgctaacttctctggccacca 28227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 27593008 - 27592960
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||| |||||||||||| |||||||||||| |||||||| |||||||    
T  27593008 atcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtt 27592960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 26937373 - 26937435
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||  |||||||||||||||||||  ||||| || |||||||||||| |||||    
T  26937373 atggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccat 26937435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 26949870 - 26949912
Alignment:
Q  14 tagttatggagaagcattggctaagcatgaagagaggttccaa 56  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  26949870 tagttatggtgaagcacttgctaagcatgaagagaggttccaa 26949912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 28185633 - 28185695
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28185633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 28297633 - 28297571
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28297633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28297571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 28325744 - 28325806
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  28325744 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 28325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 28514440 - 28514502
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28514440 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28514502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 28781338 - 28781468
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctct 103  Q
    |||||| ||||  |||||| ||||||||||||   |||||| ||||||| ||| || |||  ||| | ||||| ||||||||  |||||||| | |||||    
T  28781338 atcatacaggtccttatggtgaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctct 28781437  T
Q  104 tactcaagcagctaacttgtctggcgaccat 134  Q
     || ||||| ||||||||||| ||| |||||    
T  28781438 gacccaagctgctaacttgtccggctaccat 28781468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27610983 - 27610942
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27610983 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27610942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27677595 - 27677554
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27677595 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27677554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 27679152 - 27679193
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27679152 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27679193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27706383 - 27706342
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27706383 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27706342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27718360 - 27718319
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27718360 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27718319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 27724826 - 27724785
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  27724826 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 27724785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 25580002 - 25580038
Alignment:
Q  88 aatggaagatagctcttactcaagcagctaacttgtc 124  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  25580002 aatggaagatagctcttacccaagctgctaacttgtc 25580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 26056209 - 26056245
Alignment:
Q  88 aatggaagatagctcttactcaagcagctaacttgtc 124  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26056209 aatggaagatggctcttactcaagctgctaacttgtc 26056245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 26076179 - 26076215
Alignment:
Q  88 aatggaagatagctcttactcaagcagctaacttgtc 124  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26076179 aatggaagatggctcttactcaagctgctaacttgtc 26076215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 27338023 - 27337923
Alignment:
Q  34 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 133  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27338023 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27337924  T
Q  134 t 134  Q
    |    
T  27337923 t 27337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 27398763 - 27398663
Alignment:
Q  34 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 133  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27398763 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27398664  T
Q  134 t 134  Q
    |    
T  27398663 t 27398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 27698482 - 27698434
Alignment:
Q  4 atcatagaggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||| ||||||||||||  ||||||||||| |||||||| |||||||    
T  27698482 atcataaaggtagttatggcaaagcattggctgagcatgaaaagaggtt 27698434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 28098267 - 28098215
Alignment:
Q  82 tgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    |||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  28098267 tgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 28098215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 4652 - 4529
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaa 110  Q
    |||||||||||| |||||||||||| |||||||| ||||||| ||| || |||   || | ||||| ||||||||  |||||||| | ||||| || |||    
T  4652 aggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaa 4553  T
Q  111 gcagctaacttgtctggcgaccat 134  Q
    || ||||||||||| ||| |||||    
T  4552 gctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 34992 - 35054
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  34992 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 35054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 27715 - 27776
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 133  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  27715 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 27776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 117059 - 117121
Alignment:
Q  72 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  117059 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 117121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 28127655 - 28127481
Alignment:
Q  3 tatcatagaggtagttatggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctc 102  Q
    ||||||| ||| |||||||| ||||   | |||||||||| ||||||||||||| |||| |   |  | |||||  | |||||  |||||||||||||||    
T  28127655 tatcatacagggagttatggtgaagagcttgctaagcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctc 28127556  T
Q  103 ttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgcct 177  Q
    | || ||||| ||||||||||| ||| |||||  |  ||| ||||| ||||||  |||| |||||||||||||||    
T  28127555 taacccaagctgctaacttgtccggctaccattatagtccagggtaccctactatacttaaatcttgttttgcct 28127481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 3279976 - 3280032
Alignment:
Q  78 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  3279976 aggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 3280032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 3402 - 3361
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  3402 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 3361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 14337 - 14296
Alignment:
Q  11 aggtagttatggagaagcattggctaagcatgaagagaggtt 52  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  14337 aggtagttatggtgaagcattggctgagcatgaaaagaggtt 14296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 5090875 - 5090806
Alignment:
Q  65 agatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    |||| ||||||| | |||||| |||||| |||| |||||||  ||||||||||| ||||||||| |||||    
T  5090875 agataatatggagaagttgcagaaatgggagatggctcttaagcaagcagctaatttgtctggctaccat 5090806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 58196 - 58140
Alignment:
Q  78 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 134  Q
    |||||||| |||||||||| ||||||||||||  | |||||||| |||||| |||||    
T  58196 aggttgcagaaatggaagacagctcttactcagactgctaacttctctggccaccat 58140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University