View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8034_low_9 (Length: 240)
Name: NF8034_low_9
Description: NF8034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8034_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10497908 - 10497686
Alignment:
| Q |
1 |
tcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctgagattaaagaagaagcagctaag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10497908 |
tcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctgagattaaagaagaagcagctaag |
10497809 |
T |
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| Q |
101 |
atagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatggatgcagtgaggaatcgtctgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
10497808 |
atagtactaagatcagcaaatctgctagagagagctagtaatcatcgtagagggggattgtggaaaccggttgtggatgcagtgaggaatcgtctgtcca |
10497709 |
T |
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| Q |
201 |
aatggaataatagacgcttatct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
10497708 |
aatggaataatagacgcttatct |
10497686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10502937 - 10502715
Alignment:
| Q |
1 |
tcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctgagattaaagaagaagcagctaag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10502937 |
tcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctgagattaaagaagaagcagctaag |
10502838 |
T |
|
| Q |
101 |
atagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatggatgcagtgaggaatcgtctgtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
10502837 |
atagtactaagatcagcaaatctgctagagagagctagtaatcatcgtagagggggattgtggaaaccggttgtggatgcagtgaggaatcgtctgtcca |
10502738 |
T |
|
| Q |
201 |
aatggaataatagacgcttatct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10502737 |
aatggaataatagacgcttatct |
10502715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13336210 - 13335988
Alignment:
| Q |
1 |
tcctgcttgcttttcagtatttatatccattggaactggtttttggaatactaaggaaagcaatgaacttcctgctgagattaaagaagaagcagctaag |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13336210 |
tcctgcttgcttttcagtatgtatatccattggaactggtttttggaatactaaggaaagcaatgaacttccttctgagattaaagaagaagcagctaag |
13336111 |
T |
|
| Q |
101 |
atagtactaagatcagcaaatctgctagagagagctggtaatcatcgtagagagggattgtggaaatcggttatggatgcagtgaggaatcgtctgtcca |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
13336110 |
atagtactaagatcagctcatctgctagagagagctggtaatcgtcgtagagagggattgtggaaaccggttgtggatgcagtgaggaatcgtctgtcca |
13336011 |
T |
|
| Q |
201 |
aatggaataatagacgcttatct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
13336010 |
aatggaataatagacgcttatct |
13335988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 25508466 - 25508386
Alignment:
| Q |
141 |
atcatcgtagagagggattgtggaaatcggttatggatgcagtgaggaatcgtctgtccaaatggaataatagacgcttat |
221 |
Q |
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|||||||| |||| || ||||||||| | | ||| |||| ||||| |||||| |||| |||||||||||||||| ||||| |
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| T |
25508466 |
atcatcgttgagatgggttgtggaaaccagctatcgatgtagtgatgaatcggttgtctaaatggaataatagacacttat |
25508386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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