View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8035_high_1 (Length: 515)

Name: NF8035_high_1
Description: NF8035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8035_high_1
NF8035_high_1
[»] chr5 (23 HSPs)
chr5 (215-511)||(10218122-10218419)
chr5 (93-240)||(11049560-11049722)
chr5 (87-176)||(10218450-10218539)
chr5 (61-175)||(10610080-10610194)
chr5 (61-174)||(10563397-10563510)
chr5 (199-476)||(10603276-10603551)
chr5 (9-122)||(10764875-10764988)
chr5 (336-487)||(10664558-10664710)
chr5 (13-117)||(10718681-10718785)
chr5 (199-479)||(10599611-10599889)
chr5 (1-163)||(10742439-10742601)
chr5 (350-502)||(10661470-10661623)
chr5 (326-398)||(10764622-10764694)
chr5 (431-502)||(10653584-10653655)
chr5 (1-47)||(11049718-11049764)
chr5 (61-174)||(10748741-10748854)
chr5 (193-479)||(10610227-10610511)
chr5 (328-479)||(10748423-10748575)
chr5 (349-487)||(7191675-7191814)
chr5 (348-478)||(10557589-10557720)
chr5 (353-473)||(10549467-10549588)
chr5 (191-240)||(10579522-10579571)
chr5 (191-240)||(10590072-10590121)
[»] chr6 (9 HSPs)
chr6 (14-174)||(12930599-12930759)
chr6 (9-174)||(12956396-12956561)
chr6 (9-121)||(12897883-12897995)
chr6 (67-174)||(12947017-12947124)
chr6 (9-121)||(12905504-12905617)
chr6 (431-489)||(12956834-12956892)
chr6 (329-487)||(12905840-12905999)
chr6 (348-486)||(12930948-12931087)
chr6 (451-486)||(12947417-12947452)
[»] chr2 (3 HSPs)
chr2 (329-398)||(17924893-17924962)
chr2 (9-121)||(17925185-17925297)
chr2 (431-487)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (191-240)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 215 - 511
Target Start/End: Complemental strand, 10218419 - 10218122
Alignment:
Q  215 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218419 ccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttccaactctaggatggctaa 10218320  T
Q  315 aagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgca 413  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10218319 atgatctactattgctaagtttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgca 10218220  T
Q  414 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttgagtataatc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10218219 agtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatc 10218122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 11049722 - 11049560
Alignment:
Q  93 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt---------------tct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  11049722 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttcatgccttccccaatct 11049623  T
Q  178 ccaattttgtgcgattgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11049622 ccaattttgtgcgattgggggaaatcaattctcaggaccaatccccacttccataacaaatgc 11049560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 10218539 - 10218450
Alignment:
Q  87 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218539 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtttc 10218450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 10610080 - 10610194
Alignment:
Q  61 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 160  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||| ||||||| |||||||  ||| ||||||| |||    
T  10610080 gggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcacttactgaactctcactaaccatgaatagatttaatggctcactt 10610179  T
Q  161 ccacccaacatgttt 175  Q
    |||||||||||||||    
T  10610180 ccacccaacatgttt 10610194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 10563397 - 10563510
Alignment:
Q  61 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 160  Q
    ||||| |||||| |||||||||||||||||| ||||| |||||||||| |||||||| ||||||||| |||||   ||||||||||||  ||||| ||||    
T  10563397 gggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatctt 10563496  T
Q  161 ccacccaacatgtt 174  Q
    ||| ||||||||||    
T  10563497 ccatccaacatgtt 10563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 476
Target Start/End: Original strand, 10603276 - 10603551
Alignment:
Q  199 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 298  Q
    ||||||||||| |||||||||||||||||| ||  | ||||| || |||    | ||| |||||||  | ||| | ||| ||||||||||||||||||||    
T  10603276 aaatcaattcttaggtccaatccccacttcaatttcgaatgcttcttctt---tgacattatttgaaattggtgacaaccattttgttggacaagttcca 10603372  T
Q  299 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 397  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||| |||||||  |||||||||||||||||||| ||||| |    
T  10603373 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttggagtttttaaaatcattgacaa 10603472  T
Q  398 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatc 476  Q
    | | || ||||||||||   || ||| ||| |||||| ||||||||||| |  |||| |||||  ||||| ||||||||    
T  10603473 actgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatc 10603551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 10764988 - 10764875
Alignment:
Q  9 gagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatat 108  Q
    |||||||||||||||||||||||| |||||||| |||| || |||||  |   || | ||||||||||||||||| |||||| |||||| |||| |||||    
T  10764988 gagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataatat 10764889  T
Q  109 ctcatcacttattg 122  Q
    ||||||||||||||    
T  10764888 ctcatcacttattg 10764875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 336 - 487
Target Start/End: Complemental strand, 10664710 - 10664558
Alignment:
Q  336 tggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataa 434  Q
    |||||| ||||  |||||||||||| ||||| |||||||||||||| ||||| || ||||| |||| || ||   | |||||| ||||||||  ||||||    
T  10664710 tggaattcaacagtttaggtgacaactcaactaaggatttggagttcttaaagtccttgacgaattgtagtagactacaagtgatttctatatgcaataa 10664611  T
Q  435 caattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 487  Q
     |||||||||| ||| ||| |||||||| ||||||||||||||| | ||||||    
T  10664610 taattttggagccaaattgacaaatttcgtaggcaatttatccaatcaactta 10664558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 10718785 - 10718681
Alignment:
Q  13 tattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctca 112  Q
    |||||||| |||||||||||  ||||||| |||| |||||||| ||   | |   ||||||||||||||||| |||||||||||||||||||||||||||    
T  10718785 tattccaccagaaatatgtcgtctcaaaaacttgacaattttatatgcagatcctaacaatttgtctggtataattccttcttgtttttacaatatctca 10718686  T
Q  113 tcact 117  Q
    |||||    
T  10718685 tcact 10718681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 479
Target Start/End: Original strand, 10599611 - 10599889
Alignment:
Q  199 aaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaatatttgatctcggtcaaaactattttgttggacaagttcca 298  Q
    |||| ||||||||||||||||||| ||||| ||  ||||||| || |||    | ||| |||||||  ||||| | ||| ||||||||||||||||||||    
T  10599611 aaataaattctcaggtccaatccctacttcaatttcaaatgcttcttctt---tgacattatttgaaatcggtgacaaccattttgttggacaagttcca 10599707  T
Q  299 actctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-a 397  Q
    | ||||||   ||||||||||||    |||||||||||||||   |||  |||||||||||  ||||||| ||||||| ||||||| || || ||||| |    
T  10599708 agtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgcagtttttgaagtcattgacaa 10599807  T
Q  398 attatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 479  Q
    | | || ||||||||||  ||| ||| ||| | |||| ||||||||||| |  |||| |||||  || || |||||||||||    
T  10599808 actgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatccac 10599889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10742601 - 10742439
Alignment:
Q  1 cttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttt 100  Q
    ||||||| | ||||||||||||||||||||||  || ||||  |||  |  |||| ||  |||||| ||| |||||||||||||| ||||||||||| ||    
T  10742601 cttagaaggggatattccacaagaaatatgtcgtctaaaaaatttgagaggtttatatatgggtgtaaactatttgtctggtatggttccttcttgtatt 10742502  T
Q  101 tacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttcca 163  Q
    |||||||| |||| ||| | ||||||  |||||   |||||||||||  ||||||||||||||    
T  10742501 tacaatatgtcattactgactgagctttcactagtcatgaataacttcaatggctctcttcca 10742439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 502
Target Start/End: Complemental strand, 10661623 - 10661470
Alignment:
Q  350 ttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaattat-actaagttgcaagtgctttctataaacaataacaattttggaggca 448  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||||||   | |||||  |   |||| ||||||||  || |||  ||||||| || |    
T  10661623 ttaggtgacaattcaactaaggatttggagtttttgaaaaccttgacaaacttcactaaactaagagtgatttctatatccagtaatcattttgggggta 10661524  T
Q  449 acttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 502  Q
    |||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10661523 acttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10661470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 10764694 - 10764622
Alignment:
Q  326 ttgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 398  Q
    ||||||||||||||| | ||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||    
T  10764694 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaa 10764622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 10653655 - 10653584
Alignment:
Q  431 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttattgagctatatgttg 502  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  10653655 ataataattttggaggtaacttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttg 10653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11049764 - 11049718
Alignment:
Q  1 cttagaaagagatattccacaagaaatatgtcacctcaaaagcttgt 47  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  11049764 cttagaaggagatattccacaagaaatatgtcacctcaaaagcttgt 11049718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 10748854 - 10748741
Alignment:
Q  61 gggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctctt 160  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||| | | | ||| |||||||    ||||| |||  ||||||||||    
T  10748854 gggtgagaacaatttgtctggtatgtttccttcttgtctttataatatctcatcactaactcaactctcactaaccgaaaataaatttattggctctctt 10748755  T
Q  161 ccacccaacatgtt 174  Q
    ||| ||||| ||||    
T  10748754 ccatccaacttgtt 10748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 479
Target Start/End: Original strand, 10610227 - 10610511
Alignment:
Q  193 tgggggaaatcaattctcaggtccaatccccacttccataacaaatgcatcatctcccattacaa-tatttgatctcggtcaaaactattttgttggaca 291  Q
    ||| ||||||||||||||||||||||||||   ||||||  ||||||| || || |    ||||| || ||||| | ||||||||| |||| ||||||||    
T  10610227 tggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttcttccc----tacaaataattgatttaggtcaaaacaatttggttggaca 10610322  T
Q  292 agttccaactctaggatggctaaaagatctactattgctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatct 391  Q
    |||||||| |||||    | ||  ||||||    | ||| | |||||||||||||||||| ||| |||||||||| |  ||||| ||||||||||||| |    
T  10610323 agttccaagtctagagaagttaccagatctttactggctgagtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatat 10610422  T
Q  392 ttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 479  Q
    ||||| || | || |||  |  ||  ||||||||||   ||||| || |||||||| |  |||||||||||||| ||||||||||||||    
T  10610423 ttgacaaactgtagtaaactagaaaagctttctatatctaataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 479
Target Start/End: Complemental strand, 10748575 - 10748423
Alignment:
Q  328 gctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctata 426  Q
    ||||||||||||| |||||||||| ||| |||||||||| |  ||||| ||||||||||| | |||||| |||| || |||  |  ||||| ||||||||    
T  10748575 gctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagtttttaaagtatttgacaaattgtagtaaactagaagtggtttctata 10748476  T
Q  427 aacaataacaattttggaggcaacttgccaaatttcataggcaatttatccac 479  Q
       ||||| || |||||||| |  |||||||||| ||| |||| |||||||||    
T  10748475 tgtaataataagtttggaggtagtttgccaaattccattggcagtttatccac 10748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 487
Target Start/End: Original strand, 7191675 - 7191814
Alignment:
Q  349 tttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggc 447  Q
    ||||||| ||||||| || |||||||| |||||||||||||| ||||| || | || |||  | | |||| ||||||||  |  ||| |||||||||||     
T  7191675 tttaggtaacaattccactaaggatttagagtttttaaaatccttgacaaactgtagtaaactactagtgttttctatatcctttaataattttggaggt 7191774  T
Q  448 aacttgccaaatttcataggcaatttatccactgaactta 487  Q
    || |||||||||| ||| || |||||||||||| ||||||    
T  7191775 aatttgccaaattccattgggaatttatccactcaactta 7191814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 478
Target Start/End: Original strand, 10557589 - 10557720
Alignment:
Q  348 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggagg 446  Q
    |||| ||||| |||||||| |||||||||   ||||||||||| ||||| || | || |||||||||||||  |||||||  | |||| |||||||||||    
T  10557589 attttggtgaaaattcaactaaggatttgatttttttaaaatcattgactaactgtagtaagttgcaagtgtgttctatatcccataataattttggagg 10557688  T
Q  447 caacttgccaaatttcataggcaatttatcca 478  Q
     |  |||||||||||   ||||||||||||||    
T  10557689 tagtttgccaaatttggcaggcaatttatcca 10557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 473
Target Start/End: Original strand, 10549467 - 10549588
Alignment:
Q  353 ggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataaacaataacaattttggaggcaact 451  Q
    |||||||||||||| |||||||| || ||||||||| | ||||| |||| || ||| |||||||   ||||||||  | |||| ||||||||||| |  |    
T  10549467 ggtgacaattcaactaaggatttagaatttttaaaaccattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtt 10549566  T
Q  452 tgccaaatttcataggcaattt 473  Q
    |||||| ||||||||| |||||    
T  10549567 tgccaagtttcataggtaattt 10549588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10579522 - 10579571
Alignment:
Q  191 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 240  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10579522 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10579571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 10590121 - 10590072
Alignment:
Q  191 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 240  Q
    ||||| |||||||||||||| ||||||||||| ||||||||  |||||||    
T  10590121 attggaggaaatcaattctctggtccaatcccaacttccattgcaaatgc 10590072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 12930599 - 12930759
Alignment:
Q  14 attccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatatctcat 113  Q
    ||||||||||||||||||  |||||||  |||| ||||||||  |  | ||| |||||||||||| |||| ||||||||||||| |||| ||||||||||    
T  12930599 attccacaagaaatatgtttcctcaaacacttgacaattttaggtgtgagtgagaacaatttgtccggtaagattccttcttgtctttataatatctcat 12930698  T
Q  114 cacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 174  Q
    ||||||||   || ||  |||||  |||| || || |||||||| ||||||||||||||||    
T  12930699 cacttatttcccttacggtaacacagaatcaccttcatggctcttttccacccaacatgtt 12930759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 12956396 - 12956561
Alignment:
Q  9 gagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatat 108  Q
    |||||||||||||||||||||||  |  ||||  |||| || |||||  |  ||||| |||||||||||| |||| ||||||||||||| |||| |||||    
T  12956396 gagatattccacaagaaatatgttgctgcaaacacttgacatttttagctttgggtgagaacaatttgtccggtaagattccttcttgtctttataatat 12956495  T
Q  109 ctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 174  Q
    ||||||||||||||  ||  |  |||||   |||||| || |||||||| ||||||||||||||||    
T  12956496 ctcatcacttattgcccttgcggtaacacaaaataaccttcatggctcttttccacccaacatgtt 12956561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 12897883 - 12897995
Alignment:
Q  9 gagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatat 108  Q
    |||||||||||||||||||||||  |||||||  |||| ||  ||||  |  | |||| ||||||||||| |||| ||||||||||||| |||| |||||    
T  12897883 gagatattccacaagaaatatgtttcctcaaacacttgacatatttaggtttgagtgtcaacaatttgtccggtaagattccttcttgtctttataatat 12897982  T
Q  109 ctcatcacttatt 121  Q
    |||||||||||||    
T  12897983 ctcatcacttatt 12897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 12947017 - 12947124
Alignment:
Q  67 gaacaatttgtctggtatgattccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccaccc 166  Q
    |||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||  ||  |  ||||| ||||| || || |||||||| || |||||    
T  12947017 gaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattgtcctttcggtaacactgaatcaccttcatggctcttttgcaccc 12947116  T
Q  167 aacatgtt 174  Q
    ||||||||    
T  12947117 aacatgtt 12947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 12905504 - 12905617
Alignment:
Q  9 gagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtg-aacaatttgtctggtatgattccttcttgtttttacaata 107  Q
    |||||||||||||||||||||||  |||||||  |||| || |||||  |  ||||| | ||||||||||| |||| ||| ||||||||| |||| ||||    
T  12905504 gagatattccacaagaaatatgtttcctcaaacacttgacatttttagctttgggtgagaaacaatttgtccggtaagataccttcttgtctttataata 12905603  T
Q  108 tctcatcacttatt 121  Q
    ||||||||||||||    
T  12905604 tctcatcacttatt 12905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 12956834 - 12956892
Alignment:
Q  431 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaacttatt 489  Q
    |||| |||||||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  12956834 ataataattttggaggccatttgccaaattccatagggaatttatccactgaacttatt 12956892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 487
Target Start/End: Original strand, 12905840 - 12905999
Alignment:
Q  329 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgac-aattatactaagttgcaagtgctttctataa 427  Q
    |||| ||||| || |||| |||||||| ||| |||||| |||||||| ||||||||||||| |||||| ||||  | |||  |  | |||||||| |||     
T  12905840 ctaagtttgggattcaacaatttaggtaacatttcaactaaggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatag 12905939  T
Q  428 acaataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 487  Q
    |   ||| |||||||||||  | |||||||||| ||||||||| || |||||||||||||    
T  12905940 attctaataattttggaggacatttgccaaattccataggcaacttttccactgaactta 12905999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 486
Target Start/End: Original strand, 12930948 - 12931087
Alignment:
Q  348 atttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa-ttatactaagttgcaagtgctttctataaacaataacaattttggagg 446  Q
    |||||||| |||||||||| | |||||| ||||||||||||| |||||||| ||  | |||  |  | |||||||| |||    |||| |||||||||||    
T  12930948 atttaggtaacaattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcgatatcttataataattttggagg 12931047  T
Q  447 caacttgccaaatttcataggcaatttatccactgaactt 486  Q
      | |||||||||| ||||||||||||||| |||||||||    
T  12931048 tcatttgccaaattccataggcaatttatcgactgaactt 12931087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 486
Target Start/End: Original strand, 12947417 - 12947452
Alignment:
Q  451 ttgccaaatttcataggcaatttatccactgaactt 486  Q
    |||||||||| |||||||||||||||||||||||||    
T  12947417 ttgccaaattccataggcaatttatccactgaactt 12947452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 17924962 - 17924893
Alignment:
Q  329 ctaaatttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaa 398  Q
    |||||||||||| | ||| |||||||||| |||||||| | |||||| ||||||||||||| ||||||||    
T  17924962 ctaaatttggaagaaaacaatttaggtgataattcaactatggatttagagtttttaaaatatttgacaa 17924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 17925297 - 17925185
Alignment:
Q  9 gagatattccacaagaaatatgtcacctcaaaagcttgtcaattttaaatcggggtgtgaacaatttgtctggtatgattccttcttgtttttacaatat 108  Q
    |||||||||||||||||||||||  || ||||  |||| || |||||  |  ||||| ||||||||| || |||| |||||| |||||| |||| || ||    
T  17925297 gagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataacat 17925198  T
Q  109 ctcatcacttatt 121  Q
    |||||||||||||    
T  17925197 ctcatcacttatt 17925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 487
Target Start/End: Complemental strand, 17924859 - 17924803
Alignment:
Q  431 ataacaattttggaggcaacttgccaaatttcataggcaatttatccactgaactta 487  Q
    |||| |||||||||||  | |||||||||| |||||| |||||||||||||||||||    
T  17924859 ataataattttggaggtcatttgccaaattccatagggaatttatccactgaactta 17924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 31468853 - 31468804
Alignment:
Q  191 attgggggaaatcaattctcaggtccaatccccacttccataacaaatgc 240  Q
    ||||| || ||||||||||||||||||||||| ||||||||| |||||||    
T  31468853 attggtgggaatcaattctcaggtccaatcccaacttccatatcaaatgc 31468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University