View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8035_low_3 (Length: 465)
Name: NF8035_low_3
Description: NF8035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8035_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 27814678 - 27815142
Alignment:
| Q |
1 |
acatcattagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggttttgagtattcgaaacat |
100 |
Q |
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| T |
27814678 |
acatcattagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggttttgagtattcgaaacat |
27814777 |
T |
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| Q |
101 |
gacagttaacatgggaggtttatgtcatgtaattaataacttggaacatttggaggtggtaaatttaagccatagtcttattgtggataaattggatgat |
200 |
Q |
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| T |
27814778 |
gacagttaacatgggaggtttatgtcatgtacttaataacttggaacatttggaggtggtaaatttaagccatagtcttattgtggataaattggatgat |
27814877 |
T |
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| Q |
201 |
gaacttcaacaatactcggttgatgatgtgctaagtcgtgtcaataacccatgcaagcttatcacttgtcaaattagaacatgcctttggtgcaagactc |
300 |
Q |
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| T |
27814878 |
gaacttcaacaatactcggttgatgatgtgcaaagtcgtgtcaataactcatgcaagcttatcacttgtcaaattagaacatgcctttggtgcaagactc |
27814977 |
T |
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| Q |
301 |
cgtttgcgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcattagttagtccaagaaaa |
400 |
Q |
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| T |
27814978 |
catttgcgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcattagttagtcctagaaaa |
27815077 |
T |
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| Q |
401 |
ctgggttaaagaatgcatggagcttattataaacatttgctcattttgatttagaatcatgtttg |
465 |
Q |
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| T |
27815078 |
atgggttaaagaatgcattgatcttattataaacatttgctcattttgatttagaatcatgtttg |
27815142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 27806945 - 27807403
Alignment:
| Q |
7 |
ttagcttaaagatcacatgtcgttttgaacaatatgaagctagggcattggttaactacactccaaatttaaaggttttgagtattcgaaacatgacagt |
106 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
27806945 |
ttagcttaaagatcacaggtggttttgaacaatatgaagctagggcattggttaaatgcactccaaatctaaaggttttgagtattcgaaagatgaaagt |
27807044 |
T |
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| Q |
107 |
taacatgggaggtttatgtcatgtaattaataacttggaacatttggaggtggtaaatttaagccatagtcttattgtggataaattggatgatgaactt |
206 |
Q |
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| T |
27807045 |
taacatgggaggtttatgtcacgtgcttaataacttggaacatttggaggtggtaaacttaagccatagtcttattgtggataaagtggacggtgcgttt |
27807144 |
T |
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| Q |
207 |
caacaatactcggttgatgatgtgctaagtcgtgtcaataacccatgcaagcttatcacttgtcaaattagaacatgcctttggtgcaagactccgtttg |
306 |
Q |
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| T |
27807145 |
catttatactcgattgatgatgtgctaagtcgtgtcaatatctcatgcaagcttatcacttgtcaaataacaacaagccataggtgcaagaatccatttg |
27807244 |
T |
|
| Q |
307 |
cgagaaatccaagaagaatgccacatgggaccttggaagatatttggcgtgatgatgagataaggtctctttcgcattagttagtccaagaaaactgggt |
406 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||| || ||| || || |
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| T |
27807245 |
cgagaaatccaagaagaatgccacatggatccttggaaaatatttggcgtgaagatgagataagctctctttcacattagttagtcatagtaaaatgtgt |
27807344 |
T |
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| Q |
407 |
taaagaatgcatggagcttattataaacatttgctcattttgatttagaatcatgtttg |
465 |
Q |
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| T |
27807345 |
taaagattgcatggatcttattataaacattttctcattttgaattagaatcatgtttg |
27807403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 28551251 - 28551203
Alignment:
| Q |
119 |
tttatgtcatgtaattaataacttggaacatttggaggtggtaaattta |
167 |
Q |
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| T |
28551251 |
tttatgtcgtgtacttaatagcttagaacatttggatgtggtaaattta |
28551203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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