View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8035_low_4 (Length: 368)

Name: NF8035_low_4
Description: NF8035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8035_low_4
NF8035_low_4
[»] chr6 (3 HSPs)
chr6 (4-350)||(34718070-34718416)
chr6 (5-88)||(34700554-34700637)
chr6 (287-347)||(34700129-34700189)
[»] chr2 (5 HSPs)
chr2 (4-198)||(27010779-27010973)
chr2 (213-350)||(27011005-27011142)
chr2 (5-86)||(26998527-26998608)
chr2 (5-88)||(27062087-27062170)
chr2 (287-347)||(26997773-26997833)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 350
Target Start/End: Original strand, 34718070 - 34718416
Alignment:
Q  4 attctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggtataataattttctctatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34718070 attctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggtataataattttctctatt 34718169  T
Q  104 acnnnnnnnatctcaaatattagtcattattaatttaatcagtannnnnnnnngcttgcgtcgaaaaaagaattacttttattaaatcatgtaaaaaaga 203  Q
    ||       |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  34718170 actttttttatctcaaatattagtcattattaatttaatcagtatttttttttgcttgcgtcgaaaaaagaattacttttattaaatcatgtaaaaaaga 34718269  T
Q  204 acaagaattacttttcttgttgtttcttttgttgcttcattctgagttttgcttgtatagtacaagttatgaaaatctttcagaaacaaaatttgattga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34718270 acaagaattacttttcttgttgtttcttttgttgcttcattctgagttttgcttgtatagtacaagttatgaaaatctttcagaaacaaaatttgattga 34718369  T
Q  304 gaacttgtatatcaaaattggtgtcggtccaatacatttgttggcct 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34718370 gaacttgtatatcaaaattggtgtcggtccaatacatttgttggcct 34718416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 34700637 - 34700554
Alignment:
Q  5 ttctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggtata 88  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  34700637 ttctggacaaagttcaaacaccaagaaacctctcaagaagtatgatttgattcaagataacttcacaactcttgaacaggtata 34700554  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 34700189 - 34700129
Alignment:
Q  287 aaacaaaatttgattgagaacttgtatatcaaaattggtgtcggtccaatacatttgttgg 347  Q
    ||||||||||||||| |||| ||||||||||||||| ||| || ||||||| |||||||||    
T  34700189 aaacaaaatttgattcagaatttgtatatcaaaattagtgccgatccaatatatttgttgg 34700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 27010779 - 27010973
Alignment:
Q  4 attctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggtataataattttctctatt 103  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27010779 attctggacaaagttcaaacaccaagaaacctctcaagaagtatgctttgattcaagataacttcacaactcttgaacaggtataatgattttctctatt 27010878  T
Q  104 acnnnnnnnatctcaaatattagtcattattaatttaatcagtannnnnnnnngcttgcgtcgaaaaaagaattacttttattaaatcatgtaaa 198  Q
    ||       |||||||||||||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||    
T  27010879 actttttttatctcaaatattagtcattattaatttaatcagtatttttttttgcttgtgtcgaaaaaagaattacttttattaaatcatgtaaa 27010973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 27011005 - 27011142
Alignment:
Q  213 acttttcttgttgtttcttttgttgcttcattctgagttttgcttgtatagtacaagttatgaaaatctttcagaaacaaaatttgattgagaacttgta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  27011005 acttttcttgttgtttcttttgttgcttcattctgagttttgcttgtatagtacaagttatgaaagtctttcagaaacaaaatttgattgaaaacttgta 27011104  T
Q  313 tatcaaaattggtgtcggtccaatacatttgttggcct 350  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27011105 tatcaaaattggtgtcggtccaatacatttgttggcct 27011142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 26998608 - 26998527
Alignment:
Q  5 ttctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggta 86  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  26998608 ttctggacaaagttcaaacaccaagaaacctctcaagaagtatgatttgattcaagataacttcacaactcttgaacaggta 26998527  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 27062087 - 27062170
Alignment:
Q  5 ttctggacaaagttcaaataccaagaaacctctcatgaagtatgctttgattcaagataacttcacaactcttgaacaggtata 88  Q
    |||||||||| ||||||| || ||| |||||  || |||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  27062087 ttctggacaatgttcaaacactaagcaaccttccaagaagtatgctttgattcatgataatttcactactcttgaacaggtata 27062170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 26997833 - 26997773
Alignment:
Q  287 aaacaaaatttgattgagaacttgtatatcaaaattggtgtcggtccaatacatttgttgg 347  Q
    ||||||||||||||| |||| ||||||||||||||| ||| || ||||||| |||||||||    
T  26997833 aaacaaaatttgattcagaatttgtatatcaaaattagtgccgatccaatatatttgttgg 26997773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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