View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8035_low_5 (Length: 320)
Name: NF8035_low_5
Description: NF8035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8035_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 32062896 - 32063177
Alignment:
| Q |
26 |
aagaccttcttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgttccaattcagtttcagctt |
125 |
Q |
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| T |
32062896 |
aagaccttcttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgttccaattcagtttcagctt |
32062995 |
T |
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| Q |
126 |
tcgatttcatgttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagctttcagat-----gnnnnnnnnatgcaaaccaagtgggag |
220 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
32062996 |
tccatttcatcttccaagtgagagcaatgttgttggattatggaaaccaagtgtttcagctttcagtttcaggcgtttttttatgcaaaccaagtgggag |
32063095 |
T |
|
| Q |
221 |
caatgctgttggaagttgnnnnnnncatgggtatgttggaattttattgataaaaggggggatgcctagcgcaggttaatcc |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32063096 |
caatgctgttggaagttgaaaaaaacatgggtatgttggaattttattgataaaagggggaatgcctagcgcaggttaatcc |
32063177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 301
Target Start/End: Complemental strand, 1079371 - 1079085
Alignment:
| Q |
26 |
aagaccttcttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgttccaattcagtttcagctt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1079371 |
aagaccttcttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgtttcaattcagtttcagctt |
1079272 |
T |
|
| Q |
126 |
tcgatttcatgttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagctttcagat-------gnnnnnnnnatgcaaacc----aag |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
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| T |
1079271 |
tcgatttcatcttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagctttcagtttcaggtgtttttttttatgcaaaccaattaag |
1079172 |
T |
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| Q |
215 |
tgggagcaatgctgttggaagttgnnnnnnncatgggtatgttggaattttattgataaaaggggggatgcctagcgcaggttaatc |
301 |
Q |
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| T |
1079171 |
tgagagcaatactgttggaagttgaaaaaaacatgggtatgttggaattttattgataaaaggggggatgcctagcgcaggttaatc |
1079085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 43608055 - 43608340
Alignment:
| Q |
26 |
aagaccttcttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgttccaattcagtttcagctt |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
43608055 |
aagaccttcttcttccattccaatttcttcttcatcgattcccatgaccatcgattctactgatttcaatttcaattttgtttcaattcagtttcaactt |
43608154 |
T |
|
| Q |
126 |
tcgatttcatgttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagctttca---------gatgnnnnnnnnatgcaaaccaagtg |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
43608155 |
tcgatttcatcttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagctttcagtttcaggtgtttttttttttatgcaaaccaagtg |
43608254 |
T |
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| Q |
217 |
ggagcaatgctgttggaagttg-nnnnnnncatgggtatgttggaattttattgataaaaggggggatgcctagcgcaggttaatcc |
302 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43608255 |
agagcaatgttgttggaagttgaaaaaaaacatgggtatgttggaattttattgataaaa-gggggatgcctagcgcaggttaatcc |
43608340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 34 - 302
Target Start/End: Original strand, 24141743 - 24142018
Alignment:
| Q |
34 |
cttcttccattccaatttcttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgttccaattcagtttcagctttcgatttc |
133 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24141743 |
cttcttccattccaattttttcttcatcgattcacatgaacatcgattctactgatttcaatttcaattttgtttcaattcagtttcagctttcgatttc |
24141842 |
T |
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| Q |
134 |
atgttccaagtgagagcaatgttgttggattatgcaaaccaagtgtttcagc------tttcagatgnnnnnnnnatgcaaaccaagtgggagcaatgct |
227 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||||||||| |||||||| | |
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| T |
24141843 |
atcttccaagtgagagcaatgttgttggattatgcaaaccaaatgtttcagctttcagtttcaggtgttttttttatgcaaaccaagtgagagcaatgtt |
24141942 |
T |
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| Q |
228 |
gttggaagttg-nnnnnnncatgggtatgttggaattttattgataaaaggggggatgcctagcgcaggttaatcc |
302 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24141943 |
gttggaagttgaaaaaaaacatgggtatgttggaattttattgataaaaggggggatgcctagcgcaagttaatcc |
24142018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 47209721 - 47209693
Alignment:
| Q |
33 |
tcttcttccattccaatttcttcttcatc |
61 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47209721 |
tcttcttccattccaatttcttcttcatc |
47209693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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