View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8036_low_1 (Length: 884)

Name: NF8036_low_1
Description: NF8036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8036_low_1
NF8036_low_1
[»] chr2 (7 HSPs)
chr2 (8-681)||(41505459-41506132)
chr2 (740-848)||(41505283-41505391)
chr2 (292-389)||(38283866-38283964)
chr2 (291-389)||(12892794-12892892)
chr2 (387-430)||(12115301-12115344)
chr2 (329-426)||(29927745-29927841)
chr2 (291-338)||(36940990-36941037)
[»] chr4 (3 HSPs)
chr4 (291-430)||(19401716-19401855)
chr4 (291-388)||(30027506-30027603)
chr4 (319-430)||(21121206-21121316)
[»] chr8 (4 HSPs)
chr8 (291-430)||(37165122-37165261)
chr8 (291-411)||(37973368-37973488)
chr8 (362-419)||(31645146-31645203)
chr8 (319-430)||(32703235-32703346)
[»] chr3 (5 HSPs)
chr3 (291-430)||(29035336-29035475)
chr3 (351-430)||(29570362-29570441)
chr3 (362-430)||(8029228-8029296)
chr3 (319-395)||(40362036-40362112)
chr3 (291-351)||(45681687-45681747)
[»] chr1 (3 HSPs)
chr1 (291-430)||(44686273-44686413)
chr1 (291-430)||(24122443-24122582)
chr1 (291-431)||(45962222-45962362)
[»] chr7 (2 HSPs)
chr7 (319-430)||(41639701-41639812)
chr7 (292-430)||(5038247-5038385)
[»] chr6 (4 HSPs)
chr6 (300-430)||(34205937-34206067)
chr6 (290-378)||(1063210-1063298)
chr6 (319-426)||(32549432-32549539)
chr6 (291-430)||(4332934-4333073)
[»] chr5 (2 HSPs)
chr5 (291-430)||(30393180-30393319)
chr5 (294-375)||(10400074-10400155)
[»] scaffold0067 (1 HSPs)
scaffold0067 (319-430)||(15301-15409)


Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 8 - 681
Target Start/End: Complemental strand, 41506132 - 41505459
Alignment:
Q  8 tgtcgaagaatattagggatatgttaaggtgaattgctaccaaactttaaggcagtgaaggtgtaatgaggggaaagttattctccccctacacttataa 107  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41506132 tgtcgaatattattagggatatgttaaggtgaattgctaccaaactttaaggcagtgaaggtgtaatgaggggaaagttattctccccctacacttataa 41506033  T
Q  108 aaaccacatattatttagaatggcaaaaattgtgctttttctagaaatatacctttaggggtggaaaaagaagttgatgcaagtaggggtgtatatctta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41506032 aaaccacatattatttagaatggcaaaaattgtgctttttctagaaatatacctttaggggtggaaaaagaagttgatgcaagtaggggtgtataactta 41505933  T
Q  208 tgaaactgcttggtgttggatgtagcttggccccaaatgaatggggaaaactcatttgcacannnnnnngagcaatattagccgaaaattgttgtttaca 307  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||| |||||||||| ||||||||    
T  41505932 tgaaactgcttggtgttggatgtcgcttggccccaaatgaatggggaaaactcatttgcacattttttttagcaatattacccgaaaattggtgtttaca 41505833  T
Q  308 cttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41505832 cttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggtagttaattgc 41505733  T
Q  408 cgatgaggttattttggtattttgactaccgtatctttgatgtgggaacaacattaatcatattagcctcttatgttttttccttttgtgatttggaatc 507  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41505732 cgataaggttattttggtattttgactaccgtatctttgatgtgggaacaacattaaccatattagcctcttatgttttttccttttgtgatttggaatc 41505633  T
Q  508 cccttctcaatttcttctaaaatttatactgagattgcattatttattgacttggcaccaaactctcatatctggtgtgagnnnnnnngcttaaaattaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||       ||||||||||||    
T  41505632 cccttctcaatttcttctaaaatttatactgagattgcattatttattgacttggcaccaaactctcatatccagtgtgagtttttttgcttaaaattaa 41505533  T
Q  608 acatttaaagtgcgaacttgtacatgtgaaggcgtgtgaaacccctaattagcgtttcaaactttttttccttc 681  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41505532 acatttaacgtgcgaacttgtatatgtgaaggcgtgtgaaacccctaattagcgtttcaaactttttctccttc 41505459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 740 - 848
Target Start/End: Complemental strand, 41505391 - 41505283
Alignment:
Q  740 ttacgtcaaatatgagagaccggtatcatgccaatgaaggatatatatgatcttatcatatattttggagaaaactagaaagcaaactaccaaatagagg 839  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  41505391 ttacgtcaaatatgagagactggtatcatgccaatgaatgatatatatgatcttagcatatattttggagaaaacttgaaagcaaactaccaaatagagg 41505292  T
Q  840 ggaaaacat 848  Q
    |||||||||    
T  41505291 ggaaaacat 41505283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 38283866 - 38283964
Alignment:
Q  292 aaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaacc-ccatttttcttcggcaattaactaccgttggttaaaat 389  Q
    |||||||||||||||||| ||  ||||| ||||||||||||||||||||| || |||||| | |||||||||||||| |||||||||||||||||||||    
T  38283866 aaaattgttgtttacactcttaaaaaggttaagaaacaccataaaatgacaaacttaacctcaatttttcttcggcagttaactaccgttggttaaaat 38283964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 12892794 - 12892892
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaat 389  Q
    |||||||||||||||||||||    || | |||||||||| || ||||||  |||||||||||| ||||| ||| || ||||||||||| |||||||||    
T  12892794 gaaaattgttgtttacactttgcagaaagttaagaaacactatgaaatgataaatttaaccccaattttcgtcgacagttaactaccgtcggttaaaat 12892892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 387 - 430
Target Start/End: Original strand, 12115301 - 12115344
Alignment:
Q  387 aatctatcggccgttaattgccgatgaggttattttggtatttt 430  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  12115301 aatccatcggccgttaactgccgatgaggttattttggtatttt 12115344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 29927841 - 29927745
Alignment:
Q  329 accataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggttattttggta 426  Q
    ||||| ||||||  ||||||||||||  |||| |||| | ||||||| ||| |||||||||| ||| || ||||| ||||||||||||||| ||||||    
T  29927841 accatgaaatgataaatttaaccccaaatttcatcgg-agttaactatcgtcggttaaaatccatcagcagttaactgccgatgaggttatattggta 29927745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 36940990 - 36941037
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaat 338  Q
    |||||||| |||||||||| |||| |||||||| ||||||||||||||    
T  36940990 gaaaattgatgtttacactcttgtgaaggctaaaaaacaccataaaat 36941037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 5e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 19401855 - 19401716
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  19401855 gaaaattaatgtttacactcttgtaaaggctaagaaacaccataaaatgataaatttaaccccaattttcttcggcagttaactaccgtcggttaaaatc 19401756  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  19401755 tatcggcagttaattgtcgatgaggttattttggtatttt 19401716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 30027603 - 30027506
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaa 388  Q
    |||||||||| |||||||| ||   |||||||||||| ||||||||||||||||||||||| || |||| ||||  | |||||||| || ||||||||    
T  30027603 gaaaattgttctttacactctttcgaaggctaagaaataccataaaatgacgaatttaacctcaatttttttcgatagttaactactgtcggttaaaa 30027506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 21121316 - 21121206
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggtt-aaaatctatcggccgttaattgccgatgaggtt 417  Q
    |||||||||||||||||||| |  |||||||||||| |||   ||| || |||||||| || |||| |||||  |||||  ||||| | | |||||||||    
T  21121316 gctaagaaacaccataaaataa--aatttaaccccaatttctatcgacagttaactactgtcggtttaaaattcatcggtagttaactactgatgaggtt 21121219  T
Q  418 attttggtatttt 430  Q
    |||||||||||||    
T  21121218 attttggtatttt 21121206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 291 - 430
Target Start/End: Original strand, 37165122 - 37165261
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||||| |||||||||| |||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||| |||||  |||||||| |    
T  37165122 gaaaattgctgtttacactcttgtgaaggctaagaaacatcataaaatgacaaatttaatcccatttttcttcggcagttaattaccgccggttaaaacc 37165221  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
     |||| | |||||||||||||||| |||||||| ||||||    
T  37165222 catcgtcagttaattgccgatgagattattttgatatttt 37165261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 291 - 411
Target Start/End: Original strand, 37973368 - 37973488
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    ||||||||||||||||||| ||||||||||| ||||| || |||||||||  ||||||||| || |||||||| ||| || |||||||| |||||||||     
T  37973368 gaaaattgttgtttacactcttgtaaaggctcagaaatactataaaatgataaatttaacctcaattttcttcagcagttgactaccgtcggttaaaatt 37973467  T
Q  391 tatcggccgttaattgccgat 411  Q
     |||| | ||||| |||||||    
T  37973468 catcgacagttaactgccgat 37973488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 31645203 - 31645146
Alignment:
Q  362 tcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggttat 419  Q
    |||||| |||||| |||| |||||||||| |||||| ||||| |||||||||||||||    
T  31645203 tcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttat 31645146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 32703346 - 32703235
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggtta 418  Q
    ||||||||| | ||| ||||||  |||||||| ||| ||||  | | || |||||||| || ||||||||||||||||| ||||| | ||||||| | ||    
T  32703346 gctaagaaaaatcatgaaatgataaatttaacgccaatttttattgacagttaactactgtcggttaaaatctatcggcagttaactaccgatgatgcta 32703247  T
Q  419 ttttggtatttt 430  Q
    |||| |||||||    
T  32703246 ttttagtatttt 32703235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 29035475 - 29035336
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||||||||   || |||| |||| || ||||||||||| ||||||||||    
T  29035475 gaaaatcgttgtttacacttttgtgaaggctaaaaaacacaataaaatgatgaatttaatttcaatttttttcgacatttaactaccgtcggttaaaatc 29035376  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
     ||| || ||||| | | ||| || |||||||||||||||    
T  29035375 catcagcagttaactactgataagattattttggtatttt 29035336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 29570441 - 29570362
Alignment:
Q  351 cccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggttattttggtatttt 430  Q
    |||| ||||||||||||  |||||||||  |||||||||| ||| || ||||| ||||||||||||||||||||||||||    
T  29570441 cccaattttcttcggcagctaactaccgccggttaaaatccatcagcagttaactgccgatgaggttattttggtatttt 29570362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 430
Target Start/End: Original strand, 8029228 - 8029296
Alignment:
Q  362 tcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggttattttggtatttt 430  Q
    |||||| ||||||  ||| ||||||||   |||||| ||||||||||||||||||||| ||||||||||    
T  8029228 tcggcagttaactgtcgtcggttaaaactcatcggcagttaattgccgatgaggttatattggtatttt 8029296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 40362112 - 40362036
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcg 395  Q
    ||||||||||||||||||||||  ||||||||||||  |||| | |  | ||||||||||| |||||||||| ||||    
T  40362112 gctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatccatcg 40362036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 45681687 - 45681747
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaacc 351  Q
    ||||||||||||||||| | |||| |||||||| ||| || |||||||||| |||||||||    
T  45681687 gaaaattgttgtttacattcttgtgaaggctaaaaaatactataaaatgacaaatttaacc 45681747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 44686413 - 44686273
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaa-caccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaat 389  Q
    ||||||||||||||||||| |||| |||||||| ||| ||||||||||| || |||||||| ||| |||||||||||| |||| |||    |||||||||    
T  44686413 gaaaattgttgtttacactcttgtgaaggctaaaaaaacaccataaaataacaaatttaactccaattttcttcggcagttaattacatccggttaaaat 44686314  T
Q  390 ctatcggccgttaattgccgatgaggttattttggtatttt 430  Q
      |||||| ||||| || ||||||  |||||||||||||||    
T  44686313 tcatcggcagttaactgtcgatgaaattattttggtatttt 44686273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 24122582 - 24122443
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||||| |||||||||||||   |||| |||||||||||||||||| || ||||||| | || ||||| | |  | ||||||| | | |||||| ||     
T  24122582 gaaaattgatgtttacacttttcataaggttaagaaacaccataaaataacaaatttaatctcaattttcattgatatttaactatcatcggttaacatt 24122483  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
     ||| |  ||||| || |||||||||||||||||||||||    
T  24122482 catcagtagttaactgtcgatgaggttattttggtatttt 24122443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 45962362 - 45962222
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||||||||||||||||||    || | ||||||||| | | |||||   ||||||||  |  ||||| | |||| ||||| ||||  |||||||||     
T  45962362 gaaaattgttgtttacactttgcacaaagttaagaaacatcgtgaaatggtaaatttaacttcgattttcatgggcagttaacgaccgccggttaaaatt 45962263  T
Q  391 tatcggccgttaattgccgatgaggttattttggtattttg 431  Q
    ||||||| |||||||  |||||||||||||||| |||||||    
T  45962262 tatcggcagttaattatcgatgaggttattttgctattttg 45962222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 41639812 - 41639701
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggtta 418  Q
    ||||| ||| ||||||||||||| |||||||||||| ||| | ||| || ||||||||| | ||||||| || |||| ||||||| |||||||||| |||    
T  41639812 gctaaaaaagaccataaaatgacaaatttaaccccaatttccatcgacagttaactaccatcggttaaactcgatcgaccgttaactgccgatgagatta 41639713  T
Q  419 ttttggtatttt 430  Q
    ||||||||||||    
T  41639712 ttttggtatttt 41639701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 430
Target Start/End: Original strand, 5038247 - 5038385
Alignment:
Q  292 aaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatct 391  Q
    ||||||||||||||||||||    || | ||||||||||||| ||||||  ||||||||  || ||  | ||| || |||||||||   ||||||||||     
T  5038247 aaaattgttgtttacactttgcacaaagttaagaaacaccatgaaatgaaaaatttaacttcaattaccatcgacagttaactaccacgggttaaaatcc 5038346  T
Q  392 atcggccgttaattgccgatgaggttattttggtatttt 430  Q
    |||| | ||||| ||||||||| |||||||| |||||||    
T  5038347 atcgtcagttaactgccgatgaagttattttagtatttt 5038385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 300 - 430
Target Start/End: Complemental strand, 34206067 - 34205937
Alignment:
Q  300 tgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccg 399  Q
    |||||||| |||||  |||| ||||||||| ||||||||||| || ||| ||| ||||||||||||| ||||||||||| || |||||||| |||| | |    
T  34206067 tgtttacatttttgagaaggttaagaaacatcataaaatgacaaaattatcccaatttttcttcggcgattaactaccgctgattaaaatccatcgacag 34205968  T
Q  400 ttaattgccgatgaggttattttggtatttt 430  Q
     ||| ||||||||| ||||| ||| ||||||    
T  34205967 gtaactgccgatgatgttatattgatatttt 34205937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 378
Target Start/End: Complemental strand, 1063298 - 1063210
Alignment:
Q  290 cgaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccg 378  Q
    ||||||||||||||| ||||  ||| || |||||||||||||||||||||||||||||||| | | ||||||||| || ||||||||||    
T  1063298 cgaaaattgttgtttgcactcatgtgaaagctaagaaacaccataaaatgacgaatttaactctaattttcttcgacagttaactaccg 1063210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 32549432 - 32549539
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggtta 418  Q
    ||||||||||||||| ||||||| | ||||||||||  |||| |||| | ||||||| ||| |||||||||  |||||| |||||||| |||||| ||||    
T  32549432 gctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaattcatcggcagttaattgtcgatgaagtta 32549531  T
Q  419 ttttggta 426  Q
    | ||||||    
T  32549532 tattggta 32549539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 291 - 430
Target Start/End: Original strand, 4332934 - 4333073
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    ||||||||||||||||||| ||   |||||||||||||||||| |||| || ||||||||  || ||||| |||| | |||| ||   | |||||||||     
T  4332934 gaaaattgttgtttacactattcagaaggctaagaaacaccattaaataacaaatttaacgtcaattttcatcggtagttaattattatcggttaaaatt 4333033  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
     |||| | ||||| | ||||||| ||||||||| ||||||    
T  4333034 catcgacagttaactcccgatgaagttattttgatatttt 4333073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 291 - 430
Target Start/End: Complemental strand, 30393319 - 30393180
Alignment:
Q  291 gaaaattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatc 390  Q
    |||||||||||||||||||||    || | ||||||| ||||||||||| |||||||||| ||| ||||| ||| |  ||||||||| |||||||| |||    
T  30393319 gaaaattgttgtttacactttgcacaaagttaagaaataccataaaatggcgaatttaacaccaattttcatcgacggttaactaccattggttaatatc 30393220  T
Q  391 tatcggccgttaattgccgatgaggttattttggtatttt 430  Q
     |||||| ||||| ||  |||||||||| ||| |||||||    
T  30393219 catcggcagttaactgttgatgaggttactttagtatttt 30393180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 10400074 - 10400155
Alignment:
Q  294 aattgttgtttacacttttgtaaaggctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaacta 375  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||  || ||||||||  ||||||||||    
T  10400074 aattgttgtttatactcttgtgaaggctaagaaacaccataaaatgacgaatgtaacttcaattttcttcaacaattaacta 10400155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 15409 - 15301
Alignment:
Q  319 gctaagaaacaccataaaatgacgaatttaaccccatttttcttcggcaattaactaccgttggttaaaatctatcggccgttaattgccgatgaggtta 418  Q
    ||||||||||||||| ||||||| |||||||||||| ||||| |   || |||||||||   |||||||||   ||||| |||||  | |||||||||||    
T  15409 gctaagaaacaccatgaaatgacaaatttaaccccaattttcat---cagttaactaccaccggttaaaattcgtcggcagttaacagtcgatgaggtta 15313  T
Q  419 ttttggtatttt 430  Q
    ||||||||||||    
T  15312 ttttggtatttt 15301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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