View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8036_low_3 (Length: 550)

Name: NF8036_low_3
Description: NF8036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8036_low_3
NF8036_low_3
[»] chr5 (5 HSPs)
chr5 (1-533)||(20589300-20589831)
chr5 (93-134)||(21145939-21145980)
chr5 (93-134)||(21148109-21148150)
chr5 (93-134)||(23206206-23206247)
chr5 (93-134)||(42521703-42521744)
[»] scaffold0301 (1 HSPs)
scaffold0301 (93-134)||(20733-20774)
[»] scaffold0009 (1 HSPs)
scaffold0009 (93-134)||(105513-105554)
[»] chr8 (2 HSPs)
chr8 (93-134)||(3583302-3583343)
chr8 (93-134)||(5881146-5881187)
[»] chr7 (7 HSPs)
chr7 (93-134)||(3162872-3162913)
chr7 (93-134)||(8487032-8487073)
chr7 (93-134)||(8512707-8512748)
chr7 (93-134)||(8513475-8513516)
chr7 (93-134)||(30469515-30469556)
chr7 (93-134)||(31179930-31179971)
chr7 (93-134)||(38059850-38059891)
[»] chr6 (3 HSPs)
chr6 (93-134)||(19651074-19651115)
chr6 (93-134)||(19653876-19653917)
chr6 (93-134)||(32907430-32907471)
[»] chr4 (3 HSPs)
chr4 (93-134)||(29212011-29212052)
chr4 (93-134)||(41695387-41695428)
chr4 (93-133)||(45919514-45919554)
[»] chr3 (7 HSPs)
chr3 (93-134)||(20200620-20200661)
chr3 (93-134)||(20202804-20202845)
chr3 (93-134)||(47167890-47167931)
chr3 (93-134)||(53949325-53949366)
chr3 (93-134)||(53950089-53950130)
chr3 (93-133)||(20199870-20199910)
chr3 (93-133)||(30834444-30834484)
[»] chr2 (5 HSPs)
chr2 (93-134)||(122966-123007)
chr2 (93-138)||(2055088-2055133)
chr2 (93-134)||(4776988-4777029)
chr2 (93-134)||(19386930-19386971)
chr2 (93-134)||(42849510-42849551)
[»] chr1 (7 HSPs)
chr1 (93-134)||(5496548-5496589)
chr1 (93-134)||(7013047-7013088)
chr1 (93-134)||(21790753-21790794)
chr1 (93-134)||(24081457-24081498)
chr1 (93-134)||(31151445-31151486)
chr1 (93-134)||(39848889-39848930)
chr1 (93-134)||(47374855-47374896)


Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 20589300 - 20589831
Alignment:
Q  1 gtggttaagttggtagttcatgttacctcccaacctttctggtatttttcaaaggttataggcttgactttatagtttcccatagagataaaataggatc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20589300 gtggttaagttggtagttcatgttacgtcccaacctttctggtaattttcaaaggttataggcttgactttatagtttcccatagagataaaataagatc 20589399  T
Q  101 aaatgacaccaaggtatcaaagttaatttgacacaaaagacacctaatcattactgttaatttcaaataatctaaaggctcgtatctactcactcattaa 200  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  20589400 aaatgacaccaaggtgtcaaagttaatttgacaccaaagacacctaatcaataccgttaatttcaaataatctaaaggctcatatctattcactcattaa 20589499  T
Q  201 cctgatttggtgtcacattaacttttatacacacacatacacattgtcattaaaacacaaaaagatctcaaaatgagctatgaatgcttgtaaattgcgt 300  Q
    | ||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20589500 catgatttggtgtcacaataatttttatacacacatatacacattgtcattaaa-cacaaaaagatctcaaaatgagctatgaatgcttgtaaattgcgt 20589598  T
Q  301 acctgtctacaaactgggcaagttttactcatactcatccattcgtatatacagctaaggtgataatggtgacagcaccgtgtagcaatcttagggtttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20589599 acctgtctacaaactgggcaagttttactcatactcatccattcgtatatacagctaaggtgataatggtgacagcaccgtgtagcaatcttagggtttt 20589698  T
Q  401 catcggtataatctgcaacacatatatatacgatactaatttgaacaatgtagctcttaaatcacatcaaaatagtatcatggtgttggttactaagcag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20589699 catcggtataatctgcaacacatatatatacgatactaatttgaacaatgtagctcttaaatcacatcaaaatagtatcatggtgttggttactaagcag 20589798  T
Q  501 tagattgtctctgaaagtaatgcctcacgagac 533  Q
    |||||||||||||||||||||||||||||||||    
T  20589799 tagattgtctctgaaagtaatgcctcacgagac 20589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 21145939 - 21145980
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21145939 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21145980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 21148150 - 21148109
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21148150 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 23206247 - 23206206
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  23206247 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 23206206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 42521744 - 42521703
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  42521744 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 42521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 20733 - 20774
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20733 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 105513 - 105554
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  105513 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 105554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 3583343 - 3583302
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  3583343 ataggatcaaatgacaccatggtgtcaaaattaatttgacac 3583302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 5881146 - 5881187
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  5881146 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 5881187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 3162872 - 3162913
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  3162872 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 3162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 8487032 - 8487073
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8487032 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8487073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 8512707 - 8512748
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8512707 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8512748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 8513516 - 8513475
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  8513516 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 8513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 30469515 - 30469556
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  30469515 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 30469556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 31179971 - 31179930
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  31179971 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 31179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 38059850 - 38059891
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  38059850 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 38059891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 19651074 - 19651115
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  19651074 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 19651115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 19653917 - 19653876
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  19653917 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 19653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 32907430 - 32907471
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  32907430 ataggatcaaatgacaccatggtgtcaaatttaatttgacac 32907471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 29212011 - 29212052
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  29212011 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 29212052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 41695387 - 41695428
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  41695387 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 41695428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 45919514 - 45919554
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 133  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  45919514 ataggatcaaatgacaccaaggtgtcaaattaaatttgaca 45919554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 20200661 - 20200620
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20200661 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20200620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 20202845 - 20202804
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  20202845 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 20202804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 47167890 - 47167931
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  47167890 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 47167931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 53949366 - 53949325
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  53949366 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 53949325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 53950130 - 53950089
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  53950130 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 53950089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 20199870 - 20199910
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 133  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  20199870 ataggatcaaatgacaccaaggtgtcaaattaaatttgaca 20199910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 30834484 - 30834444
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgaca 133  Q
    |||||||||||||||| |||||||||||| | |||||||||    
T  30834484 ataggatcaaatgacatcaaggtatcaaattaaatttgaca 30834444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 123007 - 122966
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  123007 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 122966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 2055133 - 2055088
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacacaaaa 138  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||||||||    
T  2055133 ataggatcaaatgacaccatggtgtcaaaattagtttgacacaaaa 2055088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 4777029 - 4776988
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  4777029 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 4776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 19386971 - 19386930
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  19386971 ataggatcaaattacaccaaggtatcaaattaaatttgacac 19386930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 42849551 - 42849510
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  42849551 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 42849510  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 5496548 - 5496589
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  5496548 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 5496589  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 7013088 - 7013047
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  7013088 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 7013047  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 21790753 - 21790794
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  21790753 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 21790794  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 24081457 - 24081498
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||    
T  24081457 ataggatcaaatgacaccatggtgtcaaaattaatttgacac 24081498  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 31151486 - 31151445
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  31151486 ataggatcaaatgacaccatggtatcaaaattagtttgacac 31151445  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 39848930 - 39848889
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  39848930 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 39848889  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 47374896 - 47374855
Alignment:
Q  93 ataggatcaaatgacaccaaggtatcaaagttaatttgacac 134  Q
    ||||||||||||||||||||||| ||||| | ||||||||||    
T  47374896 ataggatcaaatgacaccaaggtgtcaaattaaatttgacac 47374855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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