View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8036_low_4 (Length: 423)
Name: NF8036_low_4
Description: NF8036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8036_low_4 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 45270875 - 45271276
Alignment:
| Q |
19 |
cttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||| |||||||| | ||||| |
|
|
| T |
45270875 |
cttcattcataaggtacacaattaattaaataaaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggt |
45270971 |
T |
|
| Q |
119 |
accggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcg |
218 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45270972 |
accggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcg |
45271071 |
T |
|
| Q |
219 |
tcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagcggcaagagcagcctggatggttttaaattggccgctaccat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271072 |
tcatagacaccggccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccat |
45271171 |
T |
|
| Q |
319 |
ccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggta |
418 |
Q |
| |
|
| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271172 |
cattggcaacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggta |
45271271 |
T |
|
| Q |
419 |
tcctt |
423 |
Q |
| |
|
||||| |
|
|
| T |
45271272 |
tcctt |
45271276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 133 - 423
Target Start/End: Original strand, 45282760 - 45283050
Alignment:
| Q |
133 |
tcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
232 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282760 |
tctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
45282859 |
T |
|
| Q |
233 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagcggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282860 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
45282959 |
T |
|
| Q |
333 |
acattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatcctt |
423 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45282960 |
gcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggtatcctt |
45283050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 45274404 - 45274809
Alignment:
| Q |
19 |
cttcattcataaggtacacaattaattaaataaaataaaaaa-gctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattgg |
117 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||| | | | | |||| |
|
|
| T |
45274404 |
cttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttgg |
45274503 |
T |
|
| Q |
118 |
taccggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattc |
217 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45274504 |
taccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattc |
45274603 |
T |
|
| Q |
218 |
gtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagcggcaagagcagcctggatggttttaaattggccgctacca |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274604 |
gtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggatggttttaaattggccgctacca |
45274703 |
T |
|
| Q |
318 |
tccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggt |
417 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
45274704 |
tcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
45274803 |
T |
|
| Q |
418 |
atcctt |
423 |
Q |
| |
|
|||||| |
|
|
| T |
45274804 |
atcctt |
45274809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 45294034 - 45294438
Alignment:
| Q |
19 |
cttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| |
|
|
| T |
45294034 |
cttcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgac |
45294133 |
T |
|
| Q |
119 |
accggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcg |
218 |
Q |
| |
|
||| || |||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |
|
|
| T |
45294134 |
accagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattca |
45294233 |
T |
|
| Q |
219 |
tcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagcggcaagagcagcctggatggttttaaattggccgctaccat |
318 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
45294234 |
tcatagacgccagccttaacgtagatagtatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccat |
45294333 |
T |
|
| Q |
319 |
ccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggta |
418 |
Q |
| |
|
|||||||||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
45294334 |
ccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggta |
45294433 |
T |
|
| Q |
419 |
tcctt |
423 |
Q |
| |
|
||||| |
|
|
| T |
45294434 |
tcctt |
45294438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 45302994 - 45303398
Alignment:
| Q |
19 |
cttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggt |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| |
|
|
| T |
45302994 |
cttcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgac |
45303093 |
T |
|
| Q |
119 |
accggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcg |
218 |
Q |
| |
|
||| || |||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |
|
|
| T |
45303094 |
accagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattca |
45303193 |
T |
|
| Q |
219 |
tcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagcggcaagagcagcctggatggttttaaattggccgctaccat |
318 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
45303194 |
tcatagacgccagccttaacgtagatagtatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccat |
45303293 |
T |
|
| Q |
319 |
ccttggcaacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggta |
418 |
Q |
| |
|
|||||||||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
45303294 |
ccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggta |
45303393 |
T |
|
| Q |
419 |
tcctt |
423 |
Q |
| |
|
||||| |
|
|
| T |
45303394 |
tcctt |
45303398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 45282647 - 45282723
Alignment:
| Q |
19 |
cttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagg |
96 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||| |
|
|
| T |
45282647 |
cttcattcataag-taaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaagg |
45282723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
213 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
258 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 38588231 - 38588300
Alignment:
| Q |
207 |
gtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaag |
276 |
Q |
| |
|
|||||||| ||||||||||| || ||||| || ||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
38588231 |
gtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataag |
38588300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University