View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8036_low_6 (Length: 383)

Name: NF8036_low_6
Description: NF8036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8036_low_6
NF8036_low_6
[»] chr5 (2 HSPs)
chr5 (13-363)||(15674207-15674557)
chr5 (76-122)||(35670590-35670636)
[»] chr2 (2 HSPs)
chr2 (222-278)||(37893807-37893862)
chr2 (72-122)||(8756458-8756508)
[»] scaffold0148 (1 HSPs)
scaffold0148 (142-209)||(33922-33989)
[»] chr7 (1 HSPs)
chr7 (142-192)||(3761150-3761200)
[»] chr8 (5 HSPs)
chr8 (141-209)||(13634241-13634308)
chr8 (141-209)||(13734653-13734721)
chr8 (142-200)||(7493716-7493774)
chr8 (143-201)||(14402540-14402598)
chr8 (140-206)||(21138337-21138403)
[»] scaffold0363 (1 HSPs)
scaffold0363 (143-201)||(16255-16313)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 15674207 - 15674557
Alignment:
Q  13 aatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaatagtaacattactctaattcgacattacattatcaatacacaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15674207 aatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaataataacattactctaattcgacattacattatcaatacacaaa 15674306  T
Q  113 cgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttcattc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||  |||||||    
T  15674307 cgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttcttgacgccaaatgagtgtagaaattttctagcaatcataattcattc 15674406  T
Q  213 ttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagaggaaaaaagttgaagtgtgttgccattgtctagaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15674407 ttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgaggtttttagatggaagaggaaaaaagttgaagtgtgttgccatagtctagaa 15674506  T
Q  313 aatgttaggaacgacaatttactgcagttggcaaccgctaatgagccacaa 363  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  15674507 aatgttaggaacgacaatttactgcagttggcaacagctaacgagccacaa 15674557  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 35670636 - 35670590
Alignment:
Q  76 attactctaattcgacattacattatcaatacacaaacgattcaaat 122  Q
    ||||| ||||||| ||||||||||| |||||||||||||||| ||||    
T  35670636 attacactaattcaacattacattaacaatacacaaacgattgaaat 35670590  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 37893862 - 37893807
Alignment:
Q  222 ttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagag 278  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37893862 ttgagaccaagattttgcacaaaaaa-tttgaaatttggtgtttttagatggaagag 37893807  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 8756508 - 8756458
Alignment:
Q  72 taacattactctaattcgacattacattatcaatacacaaacgattcaaat 122  Q
    ||||||||| | |||||||||| |||||| |||||||||||| ||||||||    
T  8756508 taacattacaccaattcgacatgacattaacaatacacaaacaattcaaat 8756458  T

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Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 33989 - 33922
Alignment:
Q  142 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 209  Q
    |||||||||| |||||||||||||| |||| |||||| ||||||||| ||| || |||||||| ||||    
T  33989 gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatcattattca 33922  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 3761200 - 3761150
Alignment:
Q  142 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatctt 192  Q
    |||||||||| |||||||||||||| |||| |||||| |||||||||||||    
T  3761200 gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaatctt 3761150  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 13634308 - 13634241
Alignment:
Q  141 ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 209  Q
    ||||||||||| |||||| | ||||| |||  |||||||||||||||| ||| ||||||||||||||||    
T  13634308 ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaa-cttttagcaatcattcttca 13634241  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 13734721 - 13734653
Alignment:
Q  141 ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca 209  Q
    ||||||||||| |||||| | ||||| |||  ||||||||||||||||  || ||||||||||||||||    
T  13734721 ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaactttctagcaatcattcttca 13734653  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 7493774 - 7493716
Alignment:
Q  142 gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaat 200  Q
    |||||||||| ||||||  |||||| ||||  ||||||||||||||||||| |||||||    
T  7493774 gttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaat 7493716  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 14402540 - 14402598
Alignment:
Q  143 ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc 201  Q
    |||||||||||| ||| ||||||| |||| |||||| ||||||||||| | ||||||||    
T  14402540 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc 14402598  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 21138403 - 21138337
Alignment:
Q  140 gggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattct 206  Q
    |||||||||||| |||||| ||||||| || | |||||| ||||||||| ||| |||||||| ||||    
T  21138403 gggttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagcaatctttct 21138337  T

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Target: scaffold0363 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 16313 - 16255
Alignment:
Q  143 ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc 201  Q
    |||||||||||| ||| ||||||| |||| |||||| ||||||||||| | ||||||||    
T  16313 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc 16255  T

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