View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8036_low_8 (Length: 298)
Name: NF8036_low_8
Description: NF8036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8036_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 33409960 - 33410167
Alignment:
| Q |
15 |
actatggatctcaattgagtcaatttcaggaaagatattgctttgtattgggtcttttgcaacatggataaattgaaataagaagtaagca------ttt |
108 |
Q |
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| T |
33409960 |
actatggatctcaattgagtcaatttcaggaaagatattgctttgtattgggtctcttgcaacatggataaattgaaataagaagtaagctaacactttt |
33410059 |
T |
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| Q |
109 |
aataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaacaaaccaaaacataacaagatataaaattgaggatcaaatta |
208 |
Q |
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| T |
33410060 |
aataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaacaaaccaaaacataacaagatataaaattgaggatcaaatta |
33410159 |
T |
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| Q |
209 |
caatgact |
216 |
Q |
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|||||||| |
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| T |
33410160 |
caatgact |
33410167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 33423961 - 33424065
Alignment:
| Q |
110 |
ataacaaattcttaatgaatgggagagttacaatctgatttgaaggaaactcgagaacaaaccaaaacataacaagatataaaattgaggatcaaattac |
209 |
Q |
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| T |
33423961 |
ataataaattattaatgaaagttagagttacaatctgatttgaaagaa-ctcatgcacaaaccaaaacataacaggatataaaattgaggaccaaattac |
33424059 |
T |
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| Q |
210 |
aatgac |
215 |
Q |
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|||||| |
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| T |
33424060 |
aatgac |
33424065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 33415817 - 33415903
Alignment:
| Q |
17 |
tatggatctcaattgagtcaatttcaggaaagatattgctttgtattgggtcttttgcaacatggataaa-ttgaaataagaagtaag |
103 |
Q |
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| T |
33415817 |
tatggatctcaattgagttgatttcaagaatgatattgctttctcttgggtcttttgc-acatggataaagttgaactaagaagtaag |
33415903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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