View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8037_low_2 (Length: 760)
Name: NF8037_low_2
Description: NF8037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8037_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 3 - 742
Target Start/End: Complemental strand, 22477799 - 22477060
Alignment:
| Q |
3 |
taaagcaatattagctatttttattgcatatcatcatatagcaacattagctacattgtaaccaaataagaaaaaacacttgtgatacaagcagcaaaaa |
102 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22477799 |
taaagcaacattagctattttcattgcatatcatcatatagcaacattagctacagtgtaaccaaataagaaaaaacacttgtgatacaagcagcaaaga |
22477700 |
T |
|
| Q |
103 |
taagaaatgatgcctatattaggacttcaaatacaaaacttatttcaattttgtctccctcggcaatttcttcaccccttctccctagtcggggattttt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477699 |
taagaaatgatgcctatattaggacttcaaatacaaaacttatttcaattttgtctccctcggcaatttcttcaccccttctccctagtcggggattttt |
22477600 |
T |
|
| Q |
203 |
nnnnnnntccaaaaccagttagagtgcaactattaaaatgcgactaaaatcgttctcaataatcaaaacttcaaaatagtaatagaatcgggagaaacac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477599 |
aaaaaaatccaaaaccagttagagtgcaactattaaaatgcgactaaaatcattctcaataatcaaaacttcaaaatagtaatagaatcgggagaaacac |
22477500 |
T |
|
| Q |
303 |
ttattgaaaatcaggcttctctgggtaagtgcagccggacctttgaatgataacatttgctgcgtaacatccagctctcacacattcttcaataggtttc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477499 |
ttattgaaaatcaggcttctctgggtaagtgcagccggacctttgaatgataacatttgctgcgtaacatccagctctcacacattcttcaataggtttc |
22477400 |
T |
|
| Q |
403 |
tcctggaccaattgtgaaagaaatcctccaacaaaggcatctcctacaaaaacagaagnnnnnnntattgagttatgactagcacataacatgtatgatt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477399 |
tcctggaccaattgtgaaagaaatcctccaacaaaggcatctcctacaaaaacagaagaaaaaaatattgagttatgactagcacataacatgtatgatt |
22477300 |
T |
|
| Q |
503 |
ttgttccatattcaacttcaaaaagcaataggacaatacctgctccattggtatcaactaatttctctttaggtaatagaattacagggtacaatgtcac |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477299 |
ttgttccatattcaacttcaaaaagcaataggacaatacctgctccattggtatcaactaatttctctttaggtaatagaattacagggtacaatgtcac |
22477200 |
T |
|
| Q |
603 |
tttcccatcttgagcaacacacacgggatcagcaccctgtgtgataacggtaatccttttgtgtgttcctgatgcctttggcaattgggatatcttgata |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477199 |
tttcccatcttgagcaacacacacgggatcagcaccctgtgtgataacggtaatccttttgtgtgttcctgatgcctttggcaattgggatatcttgata |
22477100 |
T |
|
| Q |
703 |
gctatctcctcgacattatcggtctggtcaaaaggaaaag |
742 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22477099 |
gctatctcctcgacattatcggtctggtcaaaaggaaaag |
22477060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 40 - 460
Target Start/End: Original strand, 28167944 - 28168367
Alignment:
| Q |
40 |
atagcaacattagctacattgtaaccaaataagaaaaaacacttgtgata-caagcagcaaaaataagaaatgatgcctatat--taggacttcaaatac |
136 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| || ||||||| ||| |||||||||||||| |||||||| | || ||||||||||||||| |
|
|
| T |
28167944 |
atagcaacattagctacatt-taaccaaaataggaaaaagacatgtgataacaaacagcaaaaataagatatgatgcccagataataggacttcaaatac |
28168042 |
T |
|
| Q |
137 |
a-aaacttatttcaattttgtctccctcggcaatttcttcaccccttctccctagtcggggatttttnnnnnnntccaaaaccagttagagtgcaactat |
235 |
Q |
| |
|
| |||||||||| ||||||||||||||| |||| || |||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| |
|
|
| T |
28168043 |
ataaacttatttgaattttgtctccctcagcaactttctcactccttctccctagtcagggatttaaaaaaaaatcccaaaccagttagagtgcaactat |
28168142 |
T |
|
| Q |
236 |
taaaatgcgactaaaatcgttctcaataatcaaaacttcaaaatagtaatagaatcgggagaaacacttattgaaaatcaggcttctctgggtaagtgca |
335 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28168143 |
tgaaatgcgactaaaatcgttctcaataatcaaaatttcataatagtaatcaaatcgggagaatcacttaatgaaaatcaggcttctctgggtaagtgca |
28168242 |
T |
|
| Q |
336 |
gccggacctttgaatgataacatttgctgcgtaacatccagctctcacacattcttcaataggtttctcctggaccaattgtgaaagaaatcctccaaca |
435 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28168243 |
gccagacctttggatgataacatttgctgcataacacccagctctaacacattcttcaataggcttctcctgaaccaattgtgaaagaaatcctccaaca |
28168342 |
T |
|
| Q |
436 |
aaggcatctcctacaaaaacagaag |
460 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28168343 |
aaggcatctcctacaaaaacagaag |
28168367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 515 - 742
Target Start/End: Original strand, 28168443 - 28168670
Alignment:
| Q |
515 |
caacttcaaaaagcaataggacaatacctgctccattggtatcaactaatttctctttaggtaatagaattacagggtacaatgtcactttcccatcttg |
614 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
28168443 |
caactacaaaaagcaaaagggcaatacctgctccattggtatcaactaatttctctttaggtaatagtataacagggtacaatgtcactttcccatcttg |
28168542 |
T |
|
| Q |
615 |
agcaacacacacgggatcagcaccctgtgtgataacggtaatccttttgtgtgttcctgatgcctttggcaattgggatatcttgatagctatctcctcg |
714 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
28168543 |
agcaacacatacgggatcagcaccctgtgtgataacagtaatccttttgcgtgcctctgatgcctttggcaactgggatatctttaaagctatctcctcg |
28168642 |
T |
|
| Q |
715 |
acattatcggtctggtcaaaaggaaaag |
742 |
Q |
| |
|
||||| || |||||||||| |||||||| |
|
|
| T |
28168643 |
acattttcagtctggtcaacaggaaaag |
28168670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 540 - 712
Target Start/End: Original strand, 36870582 - 36870752
Alignment:
| Q |
540 |
acctgctccattggtatcaactaatttctctttaggtaatagaattacagggtacaatgtcactttcccatcttgagcaacacacacgggatcagcaccc |
639 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || | ||| || |||||||| |||||| | ||||||||||||| || || || ||||| ||||| |
|
|
| T |
36870582 |
acctgctccattggtatctactaatttctcttttggaactagtataacagggtaaaatgtcgcattcccatcttgagaaatgcatacaagatcaacaccc |
36870681 |
T |
|
| Q |
640 |
tgtgtgataacggtaatccttttgtgtgttcctgatgcctttggcaattgggatatcttgatagctatctcct |
712 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
36870682 |
tgtgtgataa--gtaatacttttgtgtgtttctgatgcctttggcaactgggatatctttatagctatctcct |
36870752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University