View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8037_low_3 (Length: 751)
Name: NF8037_low_3
Description: NF8037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8037_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 24 - 690
Target Start/End: Original strand, 33157259 - 33157931
Alignment:
| Q |
24 |
tctacttcttccgagaagtttcgaaagtgaaagcttgcaaagttgaaggaacgaatcagcttgaagtatggcacaagcgtttgggacatccatcttggaa |
123 |
Q |
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||||||| |||| |||| || | ||| |||| ||||||| ||||||||| | |||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
33157259 |
tctactttttccaagaaattccaaaattgaaggcttgcagagttgaagggatgaatcaactagaagtatgacacaagcgtttgggacatccatcttggaa |
33157358 |
T |
|
| Q |
124 |
aactactcaattagtctctaattgtaatgggggt----aga--gttagtgagttacaaaataaagtttgtgatacatgccaaagagctaagcaaactaga |
217 |
Q |
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||||||||| ||| | |||||| | | ||| || ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33157359 |
aactactcatttaatttctaatggcagtggtagtggtaagaatgttagtgagttatcaaataaattttgtgatacatgccaaagagctaagcaaactaga |
33157458 |
T |
|
| Q |
218 |
gaaacatttcctttgagtaatcatcaagcttctaatacatttgatttaatacattgtgatttatagggagcatataaaactccttcttcttgtggtgctt |
317 |
Q |
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||||||||||| ||||| ||| || |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
33157459 |
gaaacatttccattgagcaataataaagcttctaatatatttgatttgatacattgtgatttatggggagcatatagaactccttcttcttgcggtgctt |
33157558 |
T |
|
| Q |
318 |
cttatttccttactattgtggatgattgctctcgtgcagtatggatttctttgctaattgataagaaacaagtatcaaaaaccttgacaaatttctttgc |
417 |
Q |
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| T |
33157559 |
catattttcttactattgtcgatgattgctcgcgtgcagtatggatttttttactagttgacaaggaagaagtggcacgaacactaataaatttttttgc |
33157658 |
T |
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| Q |
418 |
tatggttgaaagacaatataacaaaagggttaaaactgtgagaagtgataatggaacagaatttattcacatgaaaaaatattttcttgaacatgggatc |
517 |
Q |
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| T |
33157659 |
tatgatagagaggcagtataacaaaaaggttaaaagtgttataagcgataatggaacagaatttatttgcatgaagaattattttgctgaacatgggatg |
33157758 |
T |
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| Q |
518 |
atgtttcaaacctcttgtacatgaatacctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggcgtgagctctgcggtttcaag |
617 |
Q |
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|| ||||||||||||||| ||| ||| |||||||||| || || |||||||| |||| ||||| || |||||||| ||||| || |||| |||| |
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| T |
33157759 |
atatttcaaacctcttgtgtgggaactccttaacaaaatggtagggttgaaagaaagcatcttcatattctcaatgtggcacgagctttgaggttccaag |
33157858 |
T |
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| Q |
618 |
gaagtttgccccttgatttttggggtgagtgtgtcttgacagcaggatacttgattaaccgcactccaagctc |
690 |
Q |
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| T |
33157859 |
gaagtttgcccattgatttttggggtgagtgtatcttgacagcagggtacttgattaatcgtactccaagctc |
33157931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 31401794 - 31401847
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
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||||||||||||||| || || |||||||||||||| ||||| || |||||||| |
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| T |
31401794 |
acctcaacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggc |
31401847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 20638060 - 20638322
Alignment:
| Q |
11 |
caaagggatggactctacttcttccgagaagtttcgaaagtgaaagcttgcaaagttgaaggaacgaatcagcttgaagtatggcacaagcgtttgggac |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20638060 |
caaagggatggactctacttcttccgagaagttccgaaagtgaaagcttgcaaagttgaaggaacgaatcagcttgaagtatggcacaagcgtttgggac |
20638159 |
T |
|
| Q |
111 |
atccatcttggaaaactactcaattagtctctaattgtaatgggggtagagttagtgagttacaaaataaagtttgtgatacatgccaaagagctaagca |
210 |
Q |
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| T |
20638160 |
atccatcttggaaaactactcaattagtctctaattgtaatgggggtagagttagtga-ttacaaaataaagtttgtgatacatgccaaagagctaagca |
20638258 |
T |
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| Q |
211 |
aactagagaaacatttcctttgagtaatcatcaagcttctaatacatttgatttaatacattgt |
274 |
Q |
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| T |
20638259 |
aactagagaaacatttcctttgagtaatcatcaagcttctaatacatttgatttaatacattgt |
20638322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 23680878 - 23680931
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
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|||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
23680878 |
acctcaacaaaatgccagagttgaaagaaaacatcaacatatccttaatgtggc |
23680931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 27689082 - 27689135
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
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|
||||||||||||||| || || |||||||||||||| ||||| || |||||||| |
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| T |
27689082 |
acctcaacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggc |
27689135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 3003605 - 3003658
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
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|||||||||||||| |||||| ||||||||||| | ||||||||||||||||| |
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| T |
3003605 |
acctcaacaaaatgccagagttgaaagaaaacaccaacatatccttaatgtggc |
3003658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 13711524 - 13711577
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
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||||||||||||||| || || |||||||||||||| ||||| || |||||||| |
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| T |
13711524 |
acctcaacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggc |
13711577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 37738864 - 37738811
Alignment:
| Q |
544 |
acctcaacaaaatggcagagtcgaaagaaaacatcgccatatccttaatgtggc |
597 |
Q |
| |
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|||||||||||||| |||||| ||||||||||| | ||||||||||||||||| |
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| T |
37738864 |
acctcaacaaaatgccagagttgaaagaaaacaccaacatatccttaatgtggc |
37738811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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