View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8037_low_4 (Length: 713)

Name: NF8037_low_4
Description: NF8037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8037_low_4
NF8037_low_4
[»] chr7 (7 HSPs)
chr7 (307-680)||(29395947-29396320)
chr7 (432-677)||(45125159-45125408)
chr7 (179-314)||(29396344-29396479)
chr7 (179-235)||(46906630-46906686)
chr7 (101-148)||(1095846-1095893)
chr7 (175-245)||(43903420-43903491)
chr7 (174-215)||(45124783-45124824)
[»] chr5 (3 HSPs)
chr5 (84-176)||(9891376-9891466)
chr5 (26-64)||(9889829-9889867)
chr5 (2-31)||(9889856-9889885)
[»] chr2 (3 HSPs)
chr2 (174-245)||(2985463-2985534)
chr2 (175-235)||(4768478-4768539)
chr2 (175-217)||(26449093-26449135)
[»] chr1 (4 HSPs)
chr1 (175-245)||(45118501-45118571)
chr1 (174-231)||(29836238-29836296)
chr1 (175-232)||(50860118-50860176)
chr1 (175-231)||(40981609-40981666)
[»] chr3 (5 HSPs)
chr3 (167-245)||(25612606-25612685)
chr3 (470-511)||(18996103-18996144)
chr3 (470-511)||(18998642-18998683)
chr3 (173-231)||(29129128-29129187)
chr3 (174-232)||(52126884-52126943)
[»] chr4 (19 HSPs)
chr4 (178-238)||(37618981-37619041)
chr4 (101-148)||(31236943-31236990)
chr4 (175-222)||(1068998-1069045)
chr4 (175-222)||(8540894-8540941)
chr4 (174-215)||(14209500-14209541)
chr4 (174-215)||(14217197-14217238)
chr4 (174-215)||(14210451-14210492)
chr4 (174-215)||(14211420-14211461)
chr4 (174-215)||(14212371-14212412)
chr4 (174-215)||(14213340-14213381)
chr4 (174-215)||(14214308-14214349)
chr4 (174-215)||(14215277-14215318)
chr4 (174-215)||(14218148-14218189)
chr4 (174-215)||(14219118-14219159)
chr4 (174-215)||(14220087-14220128)
chr4 (174-215)||(14221038-14221079)
chr4 (174-215)||(14222007-14222048)
chr4 (174-215)||(14222976-14223017)
chr4 (174-215)||(48969101-48969142)
[»] chr6 (2 HSPs)
chr6 (174-232)||(25357562-25357621)
chr6 (174-232)||(23073451-23073510)
[»] chr8 (5 HSPs)
chr8 (175-216)||(16395559-16395600)
chr8 (179-222)||(23820231-23820274)
chr8 (179-222)||(40173330-40173373)
chr8 (173-235)||(42313945-42314008)
chr8 (175-232)||(38681137-38681195)
[»] scaffold0096 (1 HSPs)
scaffold0096 (175-222)||(32923-32970)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 307 - 680
Target Start/End: Complemental strand, 29396320 - 29395947
Alignment:
Q  307 tttaattttattatggtttccatgcagtttttaacttaatagcttctctttattttgttgttatatatatggctatttcacatcaattaaccgtacacct 406  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  29396320 tttaattttattatggtttccatgcagtttttaacttaacaacttctctttattttgttgctatatatatggctatttcacatcaataaaccgtacacct 29396221  T
Q  407 tcacttggcttttattcctatcatctaaaccatggtcaacataaacatggaaacgttcctatcatacctttctctgactggtgaggctatcaaattcaaa 506  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  29396220 tcacttgacttttgttcctatcatctaaaccatggtcaacataaacatggaaacgttcctatcatacctttctctgactcgtgagggtatcaaattcaaa 29396121  T
Q  507 tgaaccgtttttatttctctatttcgcaatcgttttctgatgttgagttttcatgtttttgcagcgccattgattcccaatcctgttacttatgttgata 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||  |||| |||    
T  29396120 tgaaccgtttttatttctctatttcgcaatcgttttctgatgttgagttttcatgtttttgcaacgacattgattcccaatcccgttactggtgttcata 29396021  T
Q  607 agctggttaataagctccgtcgaaaatatcgaacctatgtcattgaatttgatatggagcatgtaatatggttg 680  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29396020 agctggttaataagctccgtcgaaaatatcgaatctttgtcattgaatttgatatggagcatgtaatatggttg 29395947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 432 - 677
Target Start/End: Original strand, 45125159 - 45125408
Alignment:
Q  432 taaaccatggtcaacataaacatggaaacgttcctatcatacctttctctgactggtgaggctatcaaattcaaatgaaccgtttttatttct----cta 527  Q
    ||||||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |    |||    
T  45125159 taaaccatggcaaacataaacgtcgaaacgttcctatcatacctttctctgactggtgaggctaacaaattcaaatgaactgtttttttttttttgtcta 45125258  T
Q  528 tttcgcaatcgttttctgatgttgagttttcatgtttttgcagcgccattgattcccaatcctgttacttatgttgataagctggttaataagctccgtc 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||    
T  45125259 tttcgcaatcgttttctgatgttgagttttcatgtttttgcagcgccattgattcccaatcccgttactgatgttgatatgctggttaataagcttcgtc 45125358  T
Q  628 gaaaatatcgaacctatgtcattgaatttgatatggagcatgtaatatgg 677  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  45125359 gaaaatatcgaacctatgtcattgaatttgacgtggagcatgtaatatgg 45125408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 29396479 - 29396344
Alignment:
Q  179 tttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaattttggctccccttttgaaattttttgaattccatcttccctc 278  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||  ||| |||||||| ||||||||    
T  29396479 tttatatctaatggttgcaaacatgcttaccctaattgctaatcctaaacctaaaatttttgactccccttttgaaaagtttcgaattccaccttccctc 29396380  T
Q  279 cctaattgttttaattaaattaccttggtttaattt 314  Q
    ||||||||||||||||||||||||||||||||||||    
T  29396379 cctaattgttttaattaaattaccttggtttaattt 29396344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 46906630 - 46906686
Alignment:
Q  179 tttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46906630 tttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaa 46906686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 1095893 - 1095846
Alignment:
Q  101 ccctataatgaaaagtattcttactcacttcatcctcttcagattcat 148  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1095893 ccctataatgaaaagtattcttactcacttcatcctcatcagattcat 1095846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 43903420 - 43903491
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgc-taaccctaaacctaaaaattttggctcc 245  Q
    ||||||||||||||||| | |||||||||| ||||||||||||  |||||||||| |||   ||||||||||    
T  43903420 atcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaaacttaatttttttggctcc 43903491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 45124783 - 45124824
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||| ||||||||||||  |||||||||    
T  45124783 aatcctttatatctaatgtttgcaaacatgcaaaccctaatt 45124824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 9891376 - 9891466
Alignment:
Q  84 tgttcactagttttaccccctataatgaaaagtattcttactcacttcatcctcttcagattcatagctggaactgaaacaatgaaaacaaat 176  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9891376 tgttcactagttttaccc--tataatgaaaagtattcttactcacttcatcctcatcagattcatagctggaactgaaacaatgaaaacaaat 9891466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 9889829 - 9889867
Alignment:
Q  26 cttccaattgttctaatttgattttagttgctttgaaag 64  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  9889829 cttccaactgttctaatttgattttagttgctttgaaag 9889867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 9889856 - 9889885
Alignment:
Q  2 ttgctttgaaagcttagtagctatcttcca 31  Q
    ||||||||||||||||||||||||||||||    
T  9889856 ttgctttgaaagcttagtagctatcttcca 9889885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 2985463 - 2985534
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaattttggctcc 245  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  2985463 aatcctttatatctaatggttgcaaacatgcttaccctaattccaaaccctaaacctaaaaattttggctcc 2985534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 4768478 - 4768539
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattg-ctaaccctaaacctaaaaa 235  Q
    ||||||||||||||||  | ||||||||||||| |||||||| | |||||||||||||||||    
T  4768478 atcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaacctaaaaa 4768539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 26449093 - 26449135
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgc 217  Q
    ||||||||||||||||  | |||||||||||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatgcttaccctaattgc 26449135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 45118571 - 45118501
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaattttggctcc 245  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  45118571 atcctttatatctaatggttgcaaacatgcttaccctaattccaaaccctaaacctaaaaattttggctcc 45118501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 29836238 - 29836296
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaattg-ctaaccctaaaccta 231  Q
    |||||||||||||||||  | ||||||||| |||||||||||| | |||||||||||||    
T  29836238 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaaccta 29836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 50860118 - 50860176
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgct-aaccctaaacctaa 232  Q
    ||||||||||||||||  | |||||| ||||||||||||||||| |||| |||||||||    
T  50860118 atcctttatatctaatcctagcaaacgtgcttaccctaattgctaaaccttaaacctaa 50860176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 40981666 - 40981609
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaa-ttgctaaccctaaaccta 231  Q
    ||||||||||||||||  | ||||||||||||||||||| || | |||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaaccta 40981609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 25612606 - 25612685
Alignment:
Q  167 gaaaacaaatcctttatatctaatggttgcaaacatgcttaccctaatt-gctaaccctaaacctaaaaattttggctcc 245  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||   ||||||||||    
T  25612606 gaaaacatatcctttatatctaatggttgcaaacatgcttaccctaattccctaaccctaaacctaattgttttggctcc 25612685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 18996144 - 18996103
Alignment:
Q  470 atacctttctctgactggtgaggctatcaaattcaaatgaac 511  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  18996144 atacctttctctgactggtgaggctaacaaattcaaatgaac 18996103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 18998683 - 18998642
Alignment:
Q  470 atacctttctctgactggtgaggctatcaaattcaaatgaac 511  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  18998683 atacctttctctgactggtgaggctaacaaattcaaatgaac 18998642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 29129128 - 29129187
Alignment:
Q  173 aaatcctttatatctaatggttgcaaacatgcttaccctaattg-ctaaccctaaaccta 231  Q
    ||||||||||||||||||  | ||||||||| |||||||||||| | |||||||||||||    
T  29129128 aaatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaaccta 29129187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 52126884 - 52126943
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaattgc-taaccctaaacctaa 232  Q
    |||||||||||||||||  | ||||||||||||||||||||| | ||||||||| |||||    
T  52126884 aatcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaa 52126943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 37619041 - 37618981
Alignment:
Q  178 ctttatatctaatggttgcaaacatgcttaccctaattgctaaccctaaacctaaaaattt 238  Q
    |||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||    
T  37619041 ctttatatctaatcctagcaaacatgcttaccctaattcctaaccctaaacctaaaaattt 37618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 31236943 - 31236990
Alignment:
Q  101 ccctataatgaaaagtattcttactcacttcatcctcttcagattcat 148  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  31236943 ccctataatgaaaagtatttttactcacttcatcctcatcagattcat 31236990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 1069045 - 1068998
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgctaacc 222  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  1069045 atcctttatatctaatggttgcaaacatgcaaaccctaattgccaacc 1068998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 8540894 - 8540941
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgctaacc 222  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  8540894 atcctttatatctaatggttgcaaacatgcaaaccctaattgccaacc 8540941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14209541 - 14209500
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  14209541 aatcctttatatctaatcgtagcaaacatgcttaccctaatt 14209500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14217238 - 14217197
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  14217238 aatcctttatatctaatcgtagcaaacatgcttaccctaatt 14217197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14210492 - 14210451
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14210492 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14210451  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14211461 - 14211420
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14211461 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14211420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14212412 - 14212371
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14212412 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14212371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14213381 - 14213340
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14213381 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14213340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14214349 - 14214308
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14214349 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14214308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14215318 - 14215277
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14215318 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14215277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14218189 - 14218148
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14218189 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14218148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14219159 - 14219118
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14219159 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14219118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14220128 - 14220087
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14220128 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14221079 - 14221038
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14221079 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14221038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14222048 - 14222007
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14222048 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14222007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 14223017 - 14222976
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  14223017 aatcctttatatctaatcctagcaaacatgcttaccctaatt 14222976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 48969142 - 48969101
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt 215  Q
    ||||||||| |||||||||||| ||||||||||| |||||||    
T  48969142 aatcctttaaatctaatggttggaaacatgcttatcctaatt 48969101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 25357621 - 25357562
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaatt-gctaaccctaaacctaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  25357621 aatcctttatatctaatggttgcaaacatgcttaccctaattaccaaaccctaaacctaa 25357562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 23073510 - 23073451
Alignment:
Q  174 aatcctttatatctaatggttgcaaacatgcttaccctaattg-ctaaccctaaacctaa 232  Q
    |||| ||||||||||||  |||||||||||||||||||||||| | |||||||| |||||    
T  23073510 aatcttttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaa 23073451  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 16395559 - 16395600
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattg 216  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  16395559 atcctttatatctaatggttgcaaacatgcaaaccctaattg 16395600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 23820231 - 23820274
Alignment:
Q  179 tttatatctaatggttgcaaacatgcttaccctaattgctaacc 222  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  23820231 tttatatctaatggttgcaaacatgcaaaccctaattgccaacc 23820274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 40173373 - 40173330
Alignment:
Q  179 tttatatctaatggttgcaaacatgcttaccctaattgctaacc 222  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  40173373 tttatatctaatggttgcaaacatgcaaaccctaattgccaacc 40173330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 42314008 - 42313945
Alignment:
Q  173 aaatcctttatatctaatggttgcaaacatgcttaccctaattg-ctaaccctaaacctaaaaa 235  Q
    ||||||||||||||||||  | ||||||||||  |||||||||| |||||||||| ||||||||    
T  42314008 aaatcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaaaaa 42313945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 38681137 - 38681195
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgct-aaccctaaacctaa 232  Q
    ||||||||||||||||  | |||||||||||||||||| ||||| |||||||| |||||    
T  38681137 atcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaa 38681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 32970 - 32923
Alignment:
Q  175 atcctttatatctaatggttgcaaacatgcttaccctaattgctaacc 222  Q
    ||||||||||||||||||||||||||||||  ||| ||||||| ||||    
T  32970 atcctttatatctaatggttgcaaacatgcaaaccttaattgccaacc 32923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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