View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8037_low_5 (Length: 503)
Name: NF8037_low_5
Description: NF8037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8037_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 8692820 - 8692353
Alignment:
| Q |
16 |
atatggctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8692820 |
atatggctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagatgaaaatcacatggccttacaatgatgcaacttac |
8692721 |
T |
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| Q |
116 |
aatgaaagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8692720 |
aatgaaagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatttga |
8692621 |
T |
|
| Q |
216 |
tgaatgccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataatg |
315 |
Q |
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| T |
8692620 |
---atgccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatgtaatg |
8692524 |
T |
|
| Q |
316 |
accattttacaattgtctctaaaggaatttgaaccatgtctagttaaaaaatcaaactcttaccactaagctaatatttctttgcctaatatgttaaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8692523 |
accattttacaattgtctctaaaggaatttgaaccatgtctagttaaaaaatcaaactcttaccactaagctaatatttctttgtctaatatgttaaaat |
8692424 |
T |
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| Q |
416 |
taaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctggttttcttact |
486 |
Q |
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| T |
8692423 |
taaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctggttttcttact |
8692353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 315 - 472
Target Start/End: Complemental strand, 8707346 - 8707188
Alignment:
| Q |
315 |
gaccattttacaattgtctctaaaggaatttgaaccat-gtctagttaaaaaatcaaactcttaccactaagctaatatttctttgcctaatatgttaaa |
413 |
Q |
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||||||||||||| ||| ||| |||||||||||| || |||| |||| ||||||||||| ||||||||||||||| | ||| | | ||||||||||| | |
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| T |
8707346 |
gaccattttacaactgttcctacaggaatttgaactattgtctggttataaaatcaaactgttaccactaagctaacacttcatggtctaatatgttaga |
8707247 |
T |
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| Q |
414 |
attaaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcag |
472 |
Q |
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| T |
8707246 |
attaaatttgcttcgaatgaatcatttgatcaagataggcttcttcattcttagttcag |
8707188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 14383349 - 14383447
Alignment:
| Q |
311 |
taatgaccattttacaattgtctctaaaggaatttgaaccatgtctagtt--aaaaaatcaaactcttaccactaagctaatatttctttgcctaatat |
407 |
Q |
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| T |
14383349 |
taatgaccattttacagttgtctcaaaaggaatttgaaccatgtctagttaaaaaaaatcaaactcttatcactaagctaatacttctttacctaatat |
14383447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 14383187 - 14383277
Alignment:
| Q |
224 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataat |
314 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||| |
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| T |
14383187 |
atcacatttgtctttacagaaaactaatgtggtgagatggaaggacaaattccttctcagtctgcagattgcatcacattaagcatgtaat |
14383277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 8707778 - 8707631
Alignment:
| Q |
50 |
aatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttacaatgaaagaaacttcatcttgatagaattgttct |
149 |
Q |
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||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||| |||| |
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| T |
8707778 |
aatttcatcatgatgatgagatacact-agatagaaatcacatggccttacaatgatgcaacttacagtgaaacaaagttcgtcttgaaagagacattct |
8707680 |
T |
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| Q |
150 |
aatttcatctaacaaaataaaatttatttacctttaatgttcacattgtg |
199 |
Q |
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|| |||||| |||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
8707679 |
aaattcatcaaacaaaat-aaatttatttaccttcaatattcacattgtg |
8707631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 8699359 - 8699309
Alignment:
| Q |
224 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaatt |
274 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatt |
8699309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 475
Target Start/End: Original strand, 14384317 - 14384393
Alignment:
| Q |
398 |
tgcctaatatgttaaaattaaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctg |
475 |
Q |
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| T |
14384317 |
tgcctaatatgatgaaactaaattcgcttcaaatgaa-catttgatcaacaaaggcttcttcattcttagttcagctg |
14384393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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