View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8037_low_6 (Length: 328)
Name: NF8037_low_6
Description: NF8037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8037_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 32197334 - 32197636
Alignment:
| Q |
20 |
tgctcgtagcggtgactctggtgtccctcgtcatcgtcaggggatgaaagagagggtggagataggtgcagaaaagttggtaatcctggagtgtaaggta |
119 |
Q |
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| T |
32197334 |
tgcttgtagtggcgactctggtgtccctcgtcatcgtcaggggatgaaagagagggtggagataggtgcagaaaagttggtaatcctggagtgtaagata |
32197433 |
T |
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| Q |
120 |
ac-tcgccacaagcagcctcctagtgctagttggggtgcacaaagtggacgaagggctggtggtggcagctgaataactggaggactgatctggctctcc |
218 |
Q |
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| T |
32197434 |
atgtcgccacaagcagcctcctagtgctagttggggtgcacaaagtggacgaagggctggtggtggcagctgaataactggaggactgatctggctctcc |
32197533 |
T |
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| Q |
219 |
acttttggcgcaaatgcaagaaatgtgagaaccagagttaccgagttaaaaatatagattctcttcgtattgtgtctgttttttgtttcttcctcctatg |
318 |
Q |
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| T |
32197534 |
acttttggcgcaaatgcaagaaatgtgagaaccagagttaccgagttaaaaatatagattctctttgtattgtgtctgtttttagtttcttcctcttatg |
32197633 |
T |
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| Q |
319 |
cta |
321 |
Q |
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||| |
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| T |
32197634 |
cta |
32197636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 319
Target Start/End: Complemental strand, 11340960 - 11340700
Alignment:
| Q |
61 |
ggatgaaagagagggtggagataggtgcagaaaagttggtaatcctggagtgtaaggtaactcgccacaagca--gcctcctagtgctagttggggtgca |
158 |
Q |
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| T |
11340960 |
ggatgaaggagagagtggaggtaggatcggagaagatggtgatcctggagtgtaaggtaacattccacaagcatagcttactagtgctagttggggtgca |
11340861 |
T |
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| Q |
159 |
caaagtggacgaagggctggtggtggcagctgaataactggaggactgatctggctctccacttttggcgcaaatgcaagaaatgtgagaaccagagtta |
258 |
Q |
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| T |
11340860 |
caaagtggacgaagggctggtggtggcaggtgaataactggtggtatgatctcgctctccattttcggcgcaaatgcaagaaatgtaagaaccagagtta |
11340761 |
T |
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| Q |
259 |
ccgagttaaaaatatagattctcttcgtattgtgtctgttttttgtttcttcctcctatgc |
319 |
Q |
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| T |
11340760 |
gtgatttaaaaacattgactctcttcatattgtgtctctttctagtttcttcctcttatgc |
11340700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 319
Target Start/End: Complemental strand, 11498979 - 11498719
Alignment:
| Q |
61 |
ggatgaaagagagggtggagataggtgcagaaaagttggtaatcctggagtgtaaggtaactcgccacaagca--gcctcctagtgctagttggggtgca |
158 |
Q |
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| T |
11498979 |
ggatgaaggagagagtggaggtaggatcggagaagatggtgatcctggagtgtaaggtaacattccacaagcatagcttactagtgctagttggggtgca |
11498880 |
T |
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| Q |
159 |
caaagtggacgaagggctggtggtggcagctgaataactggaggactgatctggctctccacttttggcgcaaatgcaagaaatgtgagaaccagagtta |
258 |
Q |
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| T |
11498879 |
caaagtggacgaagggctggtggtggcaggtgaataactggtggtatgatctcgctctccattttcggcgcaaatgcaagaaatgtaagaaccagagtta |
11498780 |
T |
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| Q |
259 |
ccgagttaaaaatatagattctcttcgtattgtgtctgttttttgtttcttcctcctatgc |
319 |
Q |
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|| ||||||| || || ||||||| |||||||||| ||| | ||||||||||| ||||| |
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| T |
11498779 |
gtgatttaaaaacattgactctcttcatattgtgtctctttctagtttcttcctcttatgc |
11498719 |
T |
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