View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8038_high_1 (Length: 717)
Name: NF8038_high_1
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 19 - 707
Target Start/End: Complemental strand, 40667213 - 40666524
Alignment:
| Q |
19 |
aactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaatatttccctaacattgg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40667213 |
aactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaaaatttccctaacattgg |
40667114 |
T |
|
| Q |
119 |
cctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttt |
218 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667113 |
catcactttcaccaaaccacattgtaagcaactctgggccttttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttt |
40667014 |
T |
|
| Q |
219 |
tccacatcccggaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
40667013 |
tccacatcccggaggaccatagaagagaactcctttggatggtgacatcccaaacttctcaaacttttccgggtgctcaaccggatattgaacagtctac |
40666914 |
T |
|
| Q |
319 |
gtacacattaaccaaaatcagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttga |
418 |
Q |
| |
|
||||||| ||||||||||||||| || ||| | | |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
40666913 |
gtacacacaaaccaaaatcagaaacaggtaaaactagtaaggaaatcaggtgtaattaagtagtaggaaagatttatgacctcttgcagttcacgcttga |
40666814 |
T |
|
| Q |
419 |
cattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666813 |
cattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatga |
40666714 |
T |
|
| Q |
519 |
cccattgactgatgaagtaatcaactaatgatttctaaatataggagtcgtataa-aaaactaacagtttcgcgtagagctgatgggttgcttgttccaa |
617 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40666713 |
cccattgactgatcaagtaatcaactaatgatttctaaatataggagtcgtataaaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaa |
40666614 |
T |
|
| Q |
618 |
gtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgatgtccatct |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40666613 |
gtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatct |
40666524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 25 - 707
Target Start/End: Original strand, 40722798 - 40723482
Alignment:
| Q |
25 |
aaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaatatttccctaacattggcctcac |
124 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
40722798 |
aaaccaacctgagtggcaatggaatcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaaaatttccctaacattggcttcac |
40722897 |
T |
|
| Q |
125 |
tttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccaca |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40722898 |
tttcaccaaaccacattgtaagtaattctaggccttttatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccaca |
40722997 |
T |
|
| Q |
225 |
tcccggaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacac |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40722998 |
tcccggaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgcgtacac |
40723097 |
T |
|
| Q |
325 |
attaaccaaaatcagaaatagataatattggtaaggaaataaggtgtaattaagtactaggaaagatttctgacctcttgcagttcacgcttgacattct |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40723098 |
attaaccaaaatcagaaatagataatattggtaaggaaataaggtgtaattaagtactaagaaagatttctgacctcttgcagttcacgcttgacattct |
40723197 |
T |
|
| Q |
425 |
caaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagacattcgtaagaaaacagacagcaaaaaaggaatgacccatt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
40723198 |
caaggcctccgatgtcctcccagctgacattaggcacctcaacaacatgttaatacagacattcgtaagaaaacagacaacaaaaaaggaatgactcatt |
40723297 |
T |
|
| Q |
525 |
gactgatgaagtaatcaactaatgatttctaaatataggagtcg--tataaaaaactaacagtttcgcgtagagctgatgggttgcttgttccaagtgca |
622 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40723298 |
gactgatcaagtaatcaactaatgatttctaaatataggagtcggaaagaaaacactaacagtttcacgtagagctgatgggttgcttgttccaagtgcg |
40723397 |
T |
|
| Q |
623 |
gtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgatgtccatct |
707 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
40723398 |
gtatggaaatgctcatttgtaactgccatagaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatct |
40723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 27 - 318
Target Start/End: Complemental strand, 27978528 - 27978237
Alignment:
| Q |
27 |
acaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaatatttccctaacattggcctcactt |
126 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||||||| || |||||||||||||| || | ||| |||||||| |||||||| ||||| ||||||||| |
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|
| T |
27978528 |
acaaacctgagttgcaatagaatcaagttcatcaaagaaaaggacacatggagcagaaccacgagctttgtcaaaaatttccctcacattagcctcactt |
27978429 |
T |
|
| Q |
127 |
tcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatc |
226 |
Q |
| |
|
|| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| || | ||||| ||||| | |
|
|
| T |
27978428 |
tctccaaaccacattgtgagcagctcgggacctttgatactaatgaagtttgcttgacattcattggcaatagctttggccaaaagggttttaccacaac |
27978329 |
T |
|
| Q |
227 |
ccggaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
318 |
Q |
| |
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| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||| |
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|
| T |
27978328 |
caggaggaccatagaacagaactccctttgaaggtgacatcccaaacttctcaaatttctcagggtgttccactggatattgaacagtctgc |
27978237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 30 - 318
Target Start/End: Original strand, 41091809 - 41092097
Alignment:
| Q |
30 |
aacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtctagccttgtcaaatatttccctaacattggcctcactttca |
129 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| || |||||||||||||| || | ||||||||||| |||||||| || || ||||||||||| |
|
|
| T |
41091809 |
aacctgagttgcaatggagtcaagttcatcaaagaataggacacatggagcagaaccacgggccttgtcaaaaatttccctcacgtttgcctcactttct |
41091908 |
T |
|
| Q |
130 |
ccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccg |
229 |
Q |
| |
|
|||||||||||||| || | || || |||||||||||||| ||||| || || |||||||| ||||| ||||| || || | ||||| |||||||| | |
|
|
| T |
41091909 |
ccaaaccacattgtgagtagctcgggacctttgatactgataaagtttgcctggcattcattggcaatagcttttgccaatagtgttttaccacatccag |
41092008 |
T |
|
| Q |
230 |
gaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttccgggtgctcaactggatattgaacagtctgc |
318 |
Q |
| |
|
||||||||||||| |||||||| || || || ||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
41092009 |
gaggaccatagaaaagaactcccttcgaaggcgacattccaaacttctcaaacttttcagggtgttccactggatattggacagtctgc |
41092097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 629 - 705
Target Start/End: Original strand, 41092395 - 41092471
Alignment:
| Q |
629 |
aaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgatgtccat |
705 |
Q |
| |
|
|||||||||||||| ||||||||||| || | ||||||||||||||| |||||||| || |||||||| | |||||| |
|
|
| T |
41092395 |
aaatgctcatttgtcactgccatggagttcaatatttcagcatcaattgtctcatcttccaagtcaatcacgtccat |
41092471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 41092174 - 41092253
Alignment:
| Q |
394 |
ctgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctg |
473 |
Q |
| |
|
||||||||||| ||||| | ||| ||||| ||||| || ||||| || ||||||||| ||||||||| ||||||||||| |
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|
| T |
41092174 |
ctgacctcttggagttccctcttaacattttcaagaccgccgatatcatcccagctgcaattaggcacttcaacaacctg |
41092253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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