View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8038_low_1 (Length: 944)
Name: NF8038_low_1
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_low_1 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 34 - 820
Target Start/End: Original strand, 4459318 - 4460118
Alignment:
| Q |
34 |
cccacaattgtgctcaaataaccaacactcgttcaaatttcaccaccaatcgatctgggttcaccggagaggacatcataaaaaggcacccat--ctact |
131 |
Q |
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| T |
4459318 |
cccacaattgtgctcaaataaccaacactcgttcaaatttcactaccaatcgatctgggttcaccggagaggacatcataaaaagacacccatatctact |
4459417 |
T |
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| Q |
132 |
cctggtccactgaagaaaaccataactagcccaaaaacccagacgaaaaatccttaaggccgtcgacagatgaagtgctaactnnnnnnntatatatcga |
231 |
Q |
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| T |
4459418 |
cctggtccactgaagaaaaccataactagcccaaaaacccagacgaaaaatccttaaggcagtcgacagatgaagtgctaa----aaatatatatatcga |
4459513 |
T |
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| Q |
232 |
aaagggacacaactcgaaaacaattcaaaatcgaaaccacccaatattgaaaacaacctaaaatctgcaagagtttgcggg--catagatggactcatat |
329 |
Q |
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| T |
4459514 |
aaagggacacaactcgaaaacaattcaaaatcgaaaccacccaaaattgaaaacaacctaaaatctgcaagagtttgcggtgacatagatggactcatat |
4459613 |
T |
|
| Q |
330 |
gggaggtcaccacatacaaacactaatagaagataccaaaaatagccacacaaccccattcaacaaaataacacccaatacctaccccaacacataaacc |
429 |
Q |
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| T |
4459614 |
gggaggtcaccacattcaaacactaatagaagataccaaaaatagccacacaaccccattcaacaaaataacacccaataccaaccccaacacataaacc |
4459713 |
T |
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| Q |
430 |
tctcgaaaaatgaatcacaatcataccccaaacatctccaaactatttacttcatccatctaagtatgaga---------tcaatgtcaagtaaacttca |
520 |
Q |
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| T |
4459714 |
tcccgaaaaatgaatcacaatcata-cccaaacatctccaaactatttacttcatccatctatgtatgagatctaaatcctcaatgtcgagtaaacttca |
4459812 |
T |
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| Q |
521 |
acagattgcaaactatggtaaaccataatttcatcatcttcattttcttcaaaccacaaacacaaaccctaaactcaaataccattcaaacaagattcga |
620 |
Q |
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| T |
4459813 |
acagattgcaaactatggtaaaccataatttcatcatcttcattttcttcaaaccacaaacacaaaccctaaactcaaacaccactcaaacaagattcga |
4459912 |
T |
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| Q |
621 |
tgcataaaatttcttgaataacccgttattgattctt------tttgtcaggaaaatgagattaatttcaaaaacctaatcactaaaaatctcttgcaaa |
714 |
Q |
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| T |
4459913 |
tgcataaaatttcttgaataacccgttattgattcttactagatttgtcaggaaaatgagattaatttcaaaaacctaatcactaaaaatctcttgcaaa |
4460012 |
T |
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| Q |
715 |
aattgcctatatatcgagaactcataaattagtagtactcataatatttggatacaactcataggtttattaattattaaagcatgtgaatatgcaatta |
814 |
Q |
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| T |
4460013 |
aattgcctatatatcgagaactcataaattagtagtactcataatatttggatacaactcataggtttattaattattaaagcatgtgaatatgcaatta |
4460112 |
T |
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| Q |
815 |
cacaag |
820 |
Q |
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|||||| |
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| T |
4460113 |
cacaag |
4460118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 880 - 925
Target Start/End: Original strand, 4460178 - 4460223
Alignment:
| Q |
880 |
ccatcgtgctaattctggtgctctggattcatcagcatcatggacg |
925 |
Q |
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| T |
4460178 |
ccatcgtgctaattctggtgccctggattcatcagcatcatggacg |
4460223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 23634 - 23574
Alignment:
| Q |
516 |
cttcaacagattgcaaactatggtaaaccataatttcatcatcttcattttcttcaaacca |
576 |
Q |
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| T |
23634 |
cttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaacca |
23574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 21310019 - 21309959
Alignment:
| Q |
516 |
cttcaacagattgcaaactatggtaaaccataatttcatcatcttcattttcttcaaacca |
576 |
Q |
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| T |
21310019 |
cttcaacagtttgcaaactatggtacaccatactctcatcatcttccttttcttcaaacca |
21309959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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