View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8038_low_10 (Length: 231)
Name: NF8038_low_10
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1560352 - 1560582
Alignment:
| Q |
1 |
ataaaaaataaatattgatatcacatagacttgttgagtatcaaagtatttcgctaagttctaaagctaggaaagattgaatgttttgaaggttaaatga |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |
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| T |
1560352 |
ataaaaaaaaaatattgatatcacatagacttgttgagtatcaaagtatttcgctaagttgtatagctaggaaagattgaatgttttgaaggtttaatga |
1560451 |
T |
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| Q |
101 |
tttggtttcagaaaatctgcaactataaaaagcgttttgaaattattagatttcatcacaataaaagacaaaccaaatctctattctttctattgctata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1560452 |
tttggtttcagaaaatctgcaactataaaaagcgttttgaaattattagatttcatcacaataaaagacaaaccaaatccctattctttctattgctata |
1560551 |
T |
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| Q |
201 |
gaaaatcaaagtttgaaggtggggtaaactc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1560552 |
gaaaatcaaagtttgaaggtggggtaaactc |
1560582 |
T |
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