View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8038_low_3 (Length: 375)
Name: NF8038_low_3
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 34562569 - 34562294
Alignment:
| Q |
18 |
ttttcttgataactagttgtttcttttatgcattgttccattttaattatgacacaagtttggtatgtaattgatcaattataattgaacnnnnnnnnnt |
117 |
Q |
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| T |
34562569 |
ttttcttgatcattagtagtttcttttatgcattgttccattttagttatgacacaagtttggtatgtaattgatcaattataattgaacaaaaaaa--t |
34562472 |
T |
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| Q |
118 |
gctggttgttttcacgttctctctattttttggtacaatagttctgcactttctaaatagggggatagaaactttcaaatctacattggtcaaaagactt |
217 |
Q |
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| T |
34562471 |
gctggttgttttcacgttctctctattttttggtac--tagttctgcactttctaaatagggggatagaaat------atctacattggtcaaaagactt |
34562380 |
T |
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| Q |
218 |
tcataaatgacaaattgacaactgcttttaattttcatgtactagtaccatacatattgttgctaaatattctttcaaaaaatata |
303 |
Q |
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| T |
34562379 |
tcataaatgacaaattgacaactgcttttaattttcatgtactagtaccatacatattgttgctaaatattctttcaaaaaatata |
34562294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 34571299 - 34571043
Alignment:
| Q |
31 |
tagttgtttcttttatgcattgttccattttaattatgacacaagtttggtatgtaattgatcaattataattgaac-nnnnnnnnntgctggttgtttt |
129 |
Q |
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| T |
34571299 |
tagtagtttcttttatgcattgttc-atattaattatgaca-aagtttggtatgtaattaatcaattacaattgaacaaaaaaaaaaagcttgttgtttt |
34571202 |
T |
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| Q |
130 |
cacgttctctctattttttg--gtacaatagttctgcactttctaaatagggggatagaaactttcaaatctacattggtcaaaagactttcataaatga |
227 |
Q |
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| T |
34571201 |
cgttttctctctatcgactgaaatactctggttctgcactttctaaatagggaaatagaaactttcaaatctacattggtcaaaagactttcataaatgt |
34571102 |
T |
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| Q |
228 |
caaattgacaactgctttta-----attttcatgtactagtaccatacatattgttgct |
281 |
Q |
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| T |
34571101 |
caaattgacaactgcttttaattatattttcatgtactagtaccatacatattgttgct |
34571043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 369
Target Start/End: Complemental strand, 34562011 - 34561947
Alignment:
| Q |
305 |
tttatcaattcatctttcttttatacgtggtgaaggtgcttagggttatggactagtattatcta |
369 |
Q |
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| T |
34562011 |
tttatcaattcatctttcttttatacgtggtgaaggtgcttagggttatggactagtattatcta |
34561947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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