View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8038_low_4 (Length: 366)
Name: NF8038_low_4
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 22537399 - 22537216
Alignment:
| Q |
7 |
tttggtgttggagaaaaagtgaaattaagggagtaaggaggttattttgtaatggatttcctagacttgatgatgtgtcacttgtgaaaggattgactgc |
106 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22537399 |
tttggtgatggagaaaaagtgaaattaagggaataaggaggttattttgtagtggatttcctagacttgatgatgtgtcacttgtgaaaggattgactgc |
22537300 |
T |
|
| Q |
107 |
taatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaattctgaatgcttggtgactaatgacaa |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
22537299 |
taatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaagtctgaatgcttggttactaatgacaa |
22537216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 26346104 - 26346191
Alignment:
| Q |
64 |
ttcctagacttgatgatgtgtcacttgtgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagt |
151 |
Q |
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||||||||||| ||||||| ||||||||||||| ||||||| ||||| |||||||| | ||||| ||||| ||||| |||||||| |
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| T |
26346104 |
ttcctagactttatgatgttctacttgtgaaaggactgactgccaattttatcagcatcaaccaattgtgtgaccaaggactaaaagt |
26346191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 33 - 348
Target Start/End: Complemental strand, 18591572 - 18591256
Alignment:
| Q |
33 |
aagggagtaaggaggttattttgtaatggatttcctagacttgatgatgtgtcacttgtgaaaggattgactgctaatttgatcagcattagtcaattat |
132 |
Q |
| |
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||||||||| | | |||| |||||| |||| ||| ||||||||||||||| |||||||||||||||| ||| ||| || |||| ||||||||||||| |
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| T |
18591572 |
aagggagtaggaaagttagtttgtactggacttcatagacttgatgatgttcttcttgtgaaaggattgattgcaaatctggtcagtattagtcaattat |
18591473 |
T |
|
| Q |
133 |
gtgatcaaggtctaaaagtcaatttcaccaattctgaatgcttggtgactaatgacaagaatgatgtgctaattagaggtgtatgatccaaaaacaattg |
232 |
Q |
| |
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||||||||||| ||||| | ||||||||||| || ||||| | ||| ||||||| ||||||||||| || || ||||| ||| |||| ||| |||| | |
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| T |
18591472 |
gtgatcaaggtttaaaattaaatttcaccaagtcagaatgttcggtttctaatgagaagaatgatgttctgatgagaggagtaagatctaaagacaacta |
18591373 |
T |
|
| Q |
233 |
ttacttgt-ggtacctcaagaaacaactcattgttccatttgtttaatgtccaaagaagataaagtcaagttgtggcaccaaaagcttgggcatcttaat |
331 |
Q |
| |
|
|| |||| |||||||||| |||| ||| ||| ||||| ||||||||||||||||||||| | || ||| ||||| |||| |||||||| ||||| ||| |
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| T |
18591372 |
ctatttgtgggtacctcaaaaaactacttattcttccacatgtttaatgtccaaagaagatgacgtgaagctgtggtaccagaagcttggacatctgaat |
18591273 |
T |
|
| Q |
332 |
cttaaaggcatgaagaa |
348 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
18591272 |
cttaaaggtatgaagaa |
18591256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 349
Target Start/End: Complemental strand, 20176942 - 20176658
Alignment:
| Q |
66 |
cctagacttgatgatgtgtcacttgtgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaatt |
165 |
Q |
| |
|
||||||||||||||||| | | | |||||| | | ||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || | |
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|
| T |
20176942 |
cctagacttgatgatgtcttattagtgaaaaaactaactgctaatttaataagcattagtcaattatgtgatcaaggtctgaaagtcaacttcactaagt |
20176843 |
T |
|
| Q |
166 |
ctgaatgcttggtgactaatgacaagaatgatgtgctaattagaggtgtatgatccaaaaacaattgttacttgt-ggtacctcaagaaacaactcattg |
264 |
Q |
| |
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|| ||||||||| || || ||||| ||||||| || || | ||||| |||||||| | ||||||||| || ||| |||||||| | | | ||| |
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| T |
20176842 |
ttggatgcttggttacaaacgacaaagatgatgttctgatgaaaggtgcgggatccaaagataattgttacacgtgggttcctcaagataaagtttattc |
20176743 |
T |
|
| Q |
265 |
ttccatttgtttaatgtccaaagaagataaagtcaagttgtggcaccaaaagcttgggcatcttaatcttaaaggcatgaagaag |
349 |
Q |
| |
|
||||| |||||| ||||| ||||||||| ||||||| | || |||||||| || ||||||||||||| ||||||||| ||||| |
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|
| T |
20176742 |
ttccacttgtttgatgtctaaagaagatgaagtcaaactatgacaccaaaatttttggcatcttaatctcaaaggcatgtagaag |
20176658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 68 - 348
Target Start/End: Original strand, 6097218 - 6097497
Alignment:
| Q |
68 |
tagacttgatgatgtgtcacttgtgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaattct |
167 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||| || || |
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| T |
6097218 |
tagacttaatgatgtgctactagtgaaaggattaactgctaatttgataagtattagtcaattatgtgataaaggtctaaaagtcaacttcactaagtca |
6097317 |
T |
|
| Q |
168 |
gaatgcttggtgactaatgacaagaatgatgtgctaattagaggtgtatgatccaaaaacaattgttacttgtgg-tacctcaagaaacaactcattgtt |
266 |
Q |
| |
|
|||||||||| || |||||||| ||||| | || | |||||||| |||||||| |||||| |||||||||| | ||||||| | | | ||| || |
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|
| T |
6097318 |
taatgcttggttacaaatgacaaagatgatttcctcgtaagaggtgtgagatccaaagacaatttttacttgtgggtttctcaagataaagtttattctt |
6097417 |
T |
|
| Q |
267 |
ccatttgtttaatgtccaaagaagataaagtcaagttgtggcaccaaaagcttgggcatcttaatcttaaaggcatgaagaa |
348 |
Q |
| |
|
||| |||||||||||| ||| |||| |||||||| | || || |||||||||||||||||||| || ||||| || ||||| |
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|
| T |
6097418 |
ccacttgtttaatgtctaaa--agatgaagtcaagctatgacatcaaaagcttgggcatcttaacctcaaaggtataaagaa |
6097497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 351
Target Start/End: Complemental strand, 12378553 - 12378255
Alignment:
| Q |
54 |
tgtaatggatttcctagacttgatgatgtgtcacttgtgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtca |
153 |
Q |
| |
|
||||||||| |||| |||||| || |||| ||||||||||| |||||||| ||| |||| ||||||||||||| ||||||| |||| ||||| ||| |
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|
| T |
12378553 |
tgtaatggacttccaagactttattatgttcttcttgtgaaagggttgactgcaaatctgatgagcattagtcaatcatgtgatgaagggttaaaattca |
12378454 |
T |
|
| Q |
154 |
atttcaccaattctgaatgcttggtgactaatgacaagaatgatgtgctaattagaggtgtatgatccaaaaacaattgttacttgtg-gtacctcaaga |
252 |
Q |
| |
|
||||||| | || ||||| ||||| |||||| | ||| || |||| |||| || | ||| | || ||| | || ||||||||| | || |||||||| |
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|
| T |
12378453 |
atttcactaggtcagaatgtttggttactaattagaagtattatgttataatgagggtagtaaggtcgaaagataactgttacttgcgcgttcctcaaga |
12378354 |
T |
|
| Q |
253 |
aacaactcattgttccatttgtttaatgtccaaagaagataaagtcaagttgtggcaccaaaagcttgggcatcttaatcttaaaggcatgaagaagat |
351 |
Q |
| |
|
||| | | | || || ||||||||| ||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| |
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|
| T |
12378353 |
aacttcatactctttcacatgtttaatgaccaaagaagatgaagttaagttgtggcaccagaagcttggacatctaaatcttaaaggtatgaaaaagat |
12378255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 350
Target Start/End: Complemental strand, 5293812 - 5293568
Alignment:
| Q |
106 |
ctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaattctgaatgcttggtgactaatgacaagaatgatgtgctaat |
205 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||| || || ||||| | ||| |||| ||||||||||| ||||| |
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|
| T |
5293812 |
ctaatttgatcagcatcagtcaattgtgtgatcaaggactaaaagtaaactt-accaagtcagagtgcttaattactgatgaaaagaatgatgttctaat |
5293714 |
T |
|
| Q |
206 |
tagaggtgtatgatccaaaaacaattgttacttgt-ggtacctcaagaaacaactcattgttccatttgtttaatgtccaaagaagataaagtcaagttg |
304 |
Q |
| |
|
||||| ||| | || || |||||||||| |||| ||||||||||||||| || | | ||||| ||| ||||||| ||||| ||| |||| || | |
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|
| T |
5293713 |
gagaggagtaaggtctaaggacaattgttagttgtgggtacctcaagaaacttctaactcttccacatgtctaatgtctaaagaggatgaagttgagctt |
5293614 |
T |
|
| Q |
305 |
tggcaccaaaagcttgggcatcttaatcttaaaggcatgaagaaga |
350 |
Q |
| |
|
|| ||||| |||||||| ||||| || ||||| || |||||||||| |
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|
| T |
5293613 |
tgacaccagaagcttggtcatctgaagcttaagggtatgaagaaga |
5293568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 255
Target Start/End: Complemental strand, 5291501 - 5291339
Alignment:
| Q |
93 |
aaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaattctgaatgcttggtgactaatgacaaga |
192 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| || || ||||| | ||| |||| |||| |
|
|
| T |
5291501 |
aaaggtttgacaactaatttgatcagcatcagccaattgtgtgatcaaggattaaaagtaaactt-accaagtcagagtgcttcattactgatgaaaaga |
5291403 |
T |
|
| Q |
193 |
atgatgtgctaattagaggtgtatgatccaaaaacaattgttacttgt-ggtacctcaagaaac |
255 |
Q |
| |
|
||||||| || || ||||| ||| | || || ||||||||||||||| ||||||||||||||| |
|
|
| T |
5291402 |
atgatgttctgatgagaggagtaaggtctaaggacaattgttacttgtgggtacctcaagaaac |
5291339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 9734578 - 9734743
Alignment:
| Q |
91 |
tgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaaggtctaaaagtcaatttcaccaattctgaatgcttggtgactaatgacaa |
190 |
Q |
| |
|
||||||| |||||||| || |||| |||| ||||||| | ||||||||||| ||||||| ||||| ||||| | ||||||||||| || ||||| || |
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|
| T |
9734578 |
tgaaagggttgactgcaaacctgattagcagtagtcaactgtgtgatcaagggttaaaagttaatttaaccaaattggaatgcttggtaacaaatgaaaa |
9734677 |
T |
|
| Q |
191 |
gaatgatgtgctaattagaggtgtatgatccaaaaacaattgttacttgtgg-tacctcaagaaac |
255 |
Q |
| |
|
||||||||| || || ||||| || | || || | ||||||||||| ||| ||||||||||||| |
|
|
| T |
9734678 |
gaatgatgttcttatgagaggagttaggtcaaagcataattgttacttatggttacctcaagaaac |
9734743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 18083116 - 18083064
Alignment:
| Q |
90 |
gtgaaaggattgactgctaatttgatcagcattagtcaattatgtgatcaagg |
142 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
18083116 |
gtgaaaggattgactgccaatctgatcagcattagtcaactatgtgatgaagg |
18083064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 2080825 - 2080780
Alignment:
| Q |
102 |
actgctaatttgatcagcattagtcaattatgtgatcaaggtctaa |
147 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
2080825 |
actgcaaatttgatcagcatcagtcaattgtgtgatcaagggctaa |
2080780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 22601472 - 22601570
Alignment:
| Q |
247 |
tcaagaaacaactcattgttccatttgtttaatgtccaaagaagataaagtcaagttgtggcaccaaaagcttgggcatcttaatcttaaaggcatgaag |
346 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||| ||||| ||||||| | ||| ||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
22601472 |
tcaagaaacaaattattcttccatttgtttaatgtccaaaaaagatgaagtcaa---gccccacaaaaagtttgggcatcttaatctaaaagggatgaag |
22601568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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