View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8038_low_9 (Length: 245)
Name: NF8038_low_9
Description: NF8038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8038_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40956109 - 40955876
Alignment:
| Q |
1 |
gcataagggcatggcaaaatataggagtatgattattgtcttcatgctaggagaaggagataagtcatacctatttttaggttacaatgtacactcgcaa |
100 |
Q |
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| T |
40956109 |
gcataagggcatggcaaaatataggagtatgattattgtcttcatgctaggagaaggagataagtcatacctatatttaggttacaatgtacactcttaa |
40956010 |
T |
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| Q |
101 |
-------atcttaatgcatcagaaataccatgaaagaatcttgacaaaaatcatccacaaattaaaaatttgaacattaaaattcataccaagaaatatt |
193 |
Q |
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| T |
40956009 |
gcttgcaatcttaatgcatcagaaatgccatgaaagaatcttgacaaaaatcatccacaaattaaaaatttgaacattaaaattcataccaagaaatatt |
40955910 |
T |
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| Q |
194 |
tattcaattagaagaggaagaatagaaagtagat |
227 |
Q |
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| T |
40955909 |
tattcaattagaagaggaagaatagaaagtagat |
40955876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 40953622 - 40953818
Alignment:
| Q |
19 |
atataggagtatgattattgtcttcatgctaggagaaggagataagtcatacctatttttaggttacaatgtacactc--------gcaaatcttaatgc |
110 |
Q |
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| T |
40953622 |
atataggagtatgattattgtctccatgctaggtgaaagagataagtcatacctattttttggtgacaatgtacactcttgagctttcaaatcttaatgc |
40953721 |
T |
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| Q |
111 |
atcagaaataccatgaaagaatcttgacaaaaatcatccacaaatt---aaaaatttgaacattaaaattcataccaagaaatatttattcaattagaa |
206 |
Q |
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| T |
40953722 |
atcaaaaatgccatgaaagaatctacagataaatcatccacaaattaaaaaaaattt--acattaaaattcatacaaagaagtatttatttagttagaa |
40953818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 40960696 - 40960650
Alignment:
| Q |
1 |
gcataagggcatggcaaaatataggagtatgattattgtcttcatgc |
47 |
Q |
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| T |
40960696 |
gcataagagcatggcaaaatataggagtatgattattgtcttcatgc |
40960650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 40953829 - 40953888
Alignment:
| Q |
167 |
acattaaaattcataccaagaaatatttattcaattagaagaggaagaatagaaagtagat |
227 |
Q |
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| T |
40953829 |
acattaaaattcaaaccatgaaatatttatttagttagaag-ggcataatagaaagtagat |
40953888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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