View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_high_1 (Length: 583)
Name: NF8039_high_1
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Complemental strand, 40069116 - 40068559
Alignment:
| Q |
19 |
attaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaatttaattcagttatcttgcaactagatta |
118 |
Q |
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| T |
40069116 |
attaatccctgcattgtttacctgcaaatatatgatacattatttgcttagatacatatgcagacatttaatttaattcagttatcttgcaactagatta |
40069017 |
T |
|
| Q |
119 |
taagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaatatttaagccaccatagttttcctttaaccaatcagagaattgggtgat |
218 |
Q |
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| T |
40069016 |
taagaaagaaagctagaaattaaccatatttgcttaataaacttgccagaatatttaagccaccatagttttcctttaaccaatcagagaattgggtgat |
40068917 |
T |
|
| Q |
219 |
ggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgtt |
318 |
Q |
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| T |
40068916 |
ggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgtt |
40068817 |
T |
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| Q |
319 |
gttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagacc |
418 |
Q |
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| T |
40068816 |
gttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagacc |
40068717 |
T |
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| Q |
419 |
accacctatatatatattagcccaaaattaaatttaacacatgctaggtggaaatgtactagtattcattaattccatcgattaaggattgttaactatt |
518 |
Q |
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| T |
40068716 |
accacctatatatatattagcccaaaattaaatttaacacatgctaggtggaaatatactagtattcattaattccatcgattaaggattgttaactatt |
40068617 |
T |
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| Q |
519 |
gattcaaaaatcaatgtcattatacgcttaattaaactatgtgatccggttcatctca |
576 |
Q |
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| T |
40068616 |
gattcaaaaatcaatgtcattatacgtttaattaaactatgtgattcggttcatctca |
40068559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 219 - 432
Target Start/End: Complemental strand, 44965627 - 44965414
Alignment:
| Q |
219 |
ggatgaagaatctaatacatcaagttgatgacatgccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgtt |
318 |
Q |
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| T |
44965627 |
ggatgaagaatctaatatatcaagttgatgacaatggacgtccaaaccaccttcttgcaagaccttaattgattcaacaccaacactagcatctcttgat |
44965528 |
T |
|
| Q |
319 |
gttaatattacagttactccatgttcagcaagttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagacc |
418 |
Q |
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| T |
44965527 |
gtcaacacaacagtaactccatgatctgcaagttgtcttgaaatctcaaaaccaattcctcggtttccaccggtaaccacggcaatagtttccttggacc |
44965428 |
T |
|
| Q |
419 |
accacctatatata |
432 |
Q |
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||||||| |||||| |
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| T |
44965427 |
accacctttatata |
44965414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 254 - 432
Target Start/End: Complemental strand, 10898499 - 10898321
Alignment:
| Q |
254 |
ccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttg |
353 |
Q |
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||||||| | ||||||||||||||| | ||||||||||||| | ||| ||| ||||||||||| ||||| ||| ||||| | |||||| |||||||||| |
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| T |
10898499 |
ccacatccaaaccaccttcttgcaaaatcttaattgattcagcaccagcactagcatctcttgatgttagtataacagtcaatccatgagcagcaagttg |
10898400 |
T |
|
| Q |
354 |
tcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
432 |
Q |
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|| |||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
10898399 |
cctgcaaatctcaaacccaattcctctgtttccaccggtaaccacagcaatagtttctttagaccaccacctacatata |
10898321 |
T |
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