View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_high_2 (Length: 500)
Name: NF8039_high_2
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 104 - 483
Target Start/End: Complemental strand, 30266198 - 30265819
Alignment:
| Q |
104 |
taatcgatgcctacgtgcagtgtctactctatgtcgatgtttcaaatatcctaatctactctagctaaagcatgtattgaaattcaattaaattagcacg |
203 |
Q |
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| T |
30266198 |
taatcgatgcctacgtgcagtgtctactctatgcagatgtttcaaatatcctaatctactctagctaaagcatgtattgaaattcaattaaattagcacg |
30266099 |
T |
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| Q |
204 |
aagcaaaaactaaattgtctaaccttgttccaggatcaaccaacttaagcaaataattatttctcacaacaaattcagaaacaggtgtcttcaaagcctt |
303 |
Q |
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| T |
30266098 |
aagcaaaaactaaattgtctaaccttgttccaggatcaaccaacttaagcaaataattatttctcacaacaaattcagaaacaggtgtcttcaaagcctt |
30265999 |
T |
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| Q |
304 |
atcttgatcctccaaacatgaactcttagccaaaaacccaacaacatcaaatgaactaagaataccaacaaatctcgtctgtctcatatcactattctca |
403 |
Q |
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| T |
30265998 |
atcttgatcctccaaacatgaactcttagccaaaaacccaacaacatcaaatgaactaagaataccaacaaatctcgtctgtctcatatcactattctca |
30265899 |
T |
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| Q |
404 |
ataacaccttgagatctcttcttccaaacaggtatactcccttccggtgattccgctattgctcttattgcagattccac |
483 |
Q |
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| T |
30265898 |
ataacaccttgagatctcttcttccaaacaggtatactcccttccggtgattccgctattgctcttattgcagattccac |
30265819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 30266323 - 30266246
Alignment:
| Q |
23 |
taggtagacaaataggatcctaatctatgtagcacaaacacttcagattgacaacatgacaccgtactcggtgtcaga |
100 |
Q |
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| T |
30266323 |
taggtggacaaataggatcctaatctatgtagcacaaacacttcagattgacaacatgacaccgtactcggtgtcaga |
30266246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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