View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8039_low_10 (Length: 404)

Name: NF8039_low_10
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8039_low_10
NF8039_low_10
[»] chr5 (1 HSPs)
chr5 (2-387)||(36537033-36537419)
[»] chr8 (2 HSPs)
chr8 (309-379)||(10231534-10231604)
chr8 (309-372)||(31633822-31633885)
[»] chr4 (2 HSPs)
chr4 (298-379)||(23333864-23333946)
chr4 (328-387)||(17275062-17275121)
[»] chr2 (1 HSPs)
chr2 (288-387)||(16717131-16717232)
[»] chr3 (2 HSPs)
chr3 (309-379)||(13794830-13794901)
chr3 (299-347)||(16241941-16241990)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Original strand, 36537033 - 36537419
Alignment:
Q  2 cattattctatttgtataacttctactcagtacagtgcataatattaagtgcatggaatgagatggttgttctaatcatttgcttttcaaatactannnn 101  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  36537033 cattattctatttgtataacttctattcagtacagtacataatattaagtgcatggaatgagatggttgttctaatcatttgcttttcaaatactatttt 36537132  T
Q  102 nnn-cttaagccataaaaacgatacattcacaattagctgcataagtgagagagataatgctgaatatcaatatcaaactttgcttacagtagacttaaa 200  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  36537133 ttttcttaagccataaaaacgatacattcacaattagctgcataagtgagagagatgatgctgaataacaatatcaaactttgcttacaatagacttaaa 36537232  T
Q  201 atagtacctacagtggcccctaaagaaaggtctcaaggaaaatatcatcaagacccttctagcggtttccctaatcgtcctcgttatgggtacatctact 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36537233 atagtacctacagtgggccctaaagaaaggtctcaaggaaaatatcatcaagacccttctagcggtttccctaatcttcctcgttatgggtacatctact 36537332  T
Q  301 cttcgtagaaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaatgaagctt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36537333 cttcgtagaaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaatgaagctt 36537419  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 10231534 - 10231604
Alignment:
Q  309 aaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaa 379  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  10231534 aaaatccacggtcttccactatgattgaatgtttgcacagtgtgctacaacgtttgattacaagcaattaa 10231604  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 31633822 - 31633885
Alignment:
Q  309 aaaatctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaag 372  Q
    |||||| |||| ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  31633822 aaaatccacgaccttccactatgattgaaagtttgcacaatgtgctacaaggtttgatgacaag 31633885  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 23333946 - 23333864
Alignment:
Q  298 actcttcgtagaaaa-tctacgatcttccactatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaa 379  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||  ||||| | |||||||||||||||||||||||    
T  23333946 actcttcgtagaaaaatctacaatcttccacaatgattgaatgtttgcacgatgtgcaacaaggtttgattacaagtaattaa 23333864  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 17275121 - 17275062
Alignment:
Q  328 tatgattgaatgtttgcacagtgtgctaaaaggtttgattacaagtaattaatgaagctt 387  Q
    ||||||||||||||||||||  || ||| |||||||||| |||||||||||| |||||||    
T  17275121 tatgattgaatgtttgcacaaagttctacaaggtttgataacaagtaattaacgaagctt 17275062  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 16717232 - 16717131
Alignment:
Q  288 gggtacatctactcttcgtagaaaat-ctacgatcttccactatgattgaatgtttgcacagtg-tgctaaaaggtttgattacaagtaattaatgaagc 385  Q
    ||||||||  |||||| ||||||||| ||||| ||||||||| || ||||||||||||||| |  || || |||||||||||||||||| ||||||||||    
T  16717232 gggtacattcactctttgtagaaaattctacggtcttccactttgcttgaatgtttgcacactaatgttataaggtttgattacaagtagttaatgaagc 16717133  T
Q  386 tt 387  Q
    ||    
T  16717132 tt 16717131  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 13794830 - 13794901
Alignment:
Q  309 aaaatctacgatcttccactatgattgaatgtttgcacagt-gtgctaaaaggtttgattacaagtaattaa 379  Q
    |||||||||||  ||||||||||| |||||||||||||    |||||| |||||||||||||||||||||||    
T  13794830 aaaatctacgactttccactatgaatgaatgtttgcacccaagtgctacaaggtttgattacaagtaattaa 13794901  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 16241941 - 16241990
Alignment:
Q  299 ctcttcgtagaaaa-tctacgatcttccactatgattgaatgtttgcaca 347  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||    
T  16241941 ctcttcgtagaaaaatctatgaccttccactatgattgaatgtttgcaca 16241990  T

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