View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_11 (Length: 398)
Name: NF8039_low_11
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 39784048 - 39783684
Alignment:
| Q |
16 |
attctgcaaccccagtgagtttttaatagctgatcaatacaatcaggaaattttaaaattaactctattttgtttgtaacacctatcacattgcccaaca |
115 |
Q |
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| T |
39784048 |
attctgcaaccccagtgagtttttaatagctgatcaatacaatcaggaaattttaaaattaactctattttgtttgtaacacccatcacattgcccaaca |
39783949 |
T |
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| Q |
116 |
gggatatggagacaaatgcagtacagatattaagatataaaatgaataatcaacccaataacacagcagacaaaatttaaaatttcaccgagagttattt |
215 |
Q |
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| T |
39783948 |
gggatatagagacaaatgcagtacagatattaagatataaaatgaataatcaacccaataacacagcagacaaaatttaaaatttcaccgggagttattt |
39783849 |
T |
|
| Q |
216 |
tattggaagattaaaggcagtacataatggtaccaaaggaaattccagtcattgtctacagctggaaatacataaaatgaataatcattttttgatataa |
315 |
Q |
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| T |
39783848 |
tattggaagattaaaggcagtacataatggtaccaaaggaaattccagtcattgtctacagctggaaatacataaaatgaataatcattttttgatataa |
39783749 |
T |
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| Q |
316 |
gaaaatatctatattgggtgaacaattcaagatgtaatgcaagatacatttctatatgcaaataa |
380 |
Q |
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| T |
39783748 |
gaaaatatctatattgggtgaacaattcaagatgtaatgcaagatacatttctatatgcaaataa |
39783684 |
T |
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