View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_12 (Length: 391)
Name: NF8039_low_12
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 31526464 - 31526118
Alignment:
| Q |
19 |
aaccatgcactgcataagatgnnnnnnnaacaacatccaacgagttacgcaacaaaatatttccttgttttgcataagatattcacttaagattccttgt |
118 |
Q |
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| T |
31526464 |
aaccatgcactgcataagatgtttttttaacaacatccaacgagttacg-aacaaaatatttccttgttttgcataagatattcacttaagattccttgt |
31526366 |
T |
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| Q |
119 |
ccatagctctatactttccttggagaaggaacaaccatgaataggaatattttttgtatgccttaggtgctgatgggctagcccccaaactagtaaataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31526365 |
ccatagctctatactttccttggagaaggaacaaccatgaataggaatattttttgtatgccttaggtgctgatgggctagcccccaaactagtaaataa |
31526266 |
T |
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| Q |
219 |
aaataatgcttgaattgcatannnnnnnnatgaatttcttctcgtattcttttactaaaaatgtgtgattttggattttattgacctggaatgttgtgta |
318 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31526265 |
aaataatgcttgaattgcatattttttttatgaatttcttctcgtattcttttactaaaaatgtgtgattttggattttattgacctggaatgttgtgta |
31526166 |
T |
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| Q |
319 |
catgtatattttccccatcttttaatttaaacaagtgtttctttcatg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31526165 |
catgtatattttccccatcttttaatttaaacaagtgtttctttcatg |
31526118 |
T |
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