View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_13 (Length: 328)
Name: NF8039_low_13
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 42007084 - 42006923
Alignment:
| Q |
1 |
acagtttatgagaaagatagatgtgagtaggatattggtgatatctgcactatcaactatctccctgatcaatatcaattatgttctccatttcttttga |
100 |
Q |
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| T |
42007084 |
acagtttatgagaaagatagatgtgagtaggatattagtgatatctgcactatcaactatctccctgatcaatatcaattatgttctccatttattttga |
42006985 |
T |
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| Q |
101 |
gaaatgtatatacattgtgattatatgtttcgtccattcttttgacttgataaagagagatt |
162 |
Q |
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| T |
42006984 |
gaaatgtatatacattgtgattatatgtttcgtccattcttttgacttgataaagagagatt |
42006923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 42006771 - 42006610
Alignment:
| Q |
150 |
ataaagagagattctagtttagcataaacatttctcaagaaaagatttcaaaaataaatatatttactttcattcattttacaggatatacaaatcgatc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42006771 |
ataaagagagattctagtttagcataaacatttctcaagaaaagatttcaaaaataaatatatttactttcattcattttacagg--atacaaatcgatc |
42006674 |
T |
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| Q |
250 |
tttaagaa---aataattttgggcaacagtggatagatcttaaaatgactttggcaatggatga |
310 |
Q |
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| T |
42006673 |
tttaagaaaataataattttgggcaacagtggatagatcttaaaatgactttggcaatggatga |
42006610 |
T |
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