View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8039_low_14 (Length: 326)
Name: NF8039_low_14
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 28520401 - 28520090
Alignment:
| Q |
1 |
tgaactcgcctatttttccaatatttttgctgccataattgtgagcaagaaccggttttacaagatgtccaaacttttctgaacatggaggataaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
28520401 |
tgaactcgcctatttttccaatatttttgctgccataattgtgagcaagaaccgattttacaagatgtccaaacgtgtctgaacatggaggataaccaaa |
28520302 |
T |
|
| Q |
101 |
tgcttatcgctccttttaatgatgtcgagttttctgaagcaattaaacaaccaggctttgttgtaggaagatccattacagataatgtctttgtcgcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28520301 |
tgcttatcgctccttttaatgatgtcgagttttctgaagcggttaaaaaatcaggctttgttgcaggaagatccattacagaaaatgtgtttgtcgcctt |
28520202 |
T |
|
| Q |
201 |
agaaatcatacattatttgaagtgcaggactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaaccatatgatcgtgttgattggaat |
300 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
28520201 |
agaaatcatatattatttgaagtgcaagactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaatcatatgatcgtgttgaatggaat |
28520102 |
T |
|
| Q |
301 |
tatttgtttaga |
312 |
Q |
| |
|
||||| |||||| |
|
|
| T |
28520101 |
tatttttttaga |
28520090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University