View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_15 (Length: 312)
Name: NF8039_low_15
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 30950449 - 30950165
Alignment:
| Q |
6 |
acataatgcttaaattaaaatcttggcttacaacaaaactatttataaacatggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaat |
105 |
Q |
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| T |
30950449 |
acataatgcttaaattaaaatcttggtttacaacaaaactatttataaatatggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaat |
30950350 |
T |
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| Q |
106 |
aagtttgggagattcaatcacctgtaatcagatattataagtatnnnnnnnnnctacaatattatgaattgatatacaatgataaagaataaatagtctt |
205 |
Q |
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| T |
30950349 |
aagtttgggagattcaatcacctgtaatcagatattataagtataaaaaaaaactagaatattatgaattgatatacaatgataaagaataaataatctt |
30950250 |
T |
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| Q |
206 |
ggcaaaataaatagcaacattcttttcagccaagtcacatgaatatcaacactnnnnnnncgaggtaaataattaattaattaat |
290 |
Q |
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| T |
30950249 |
ggcaaaataaatagcaacattcttttcagccaagtcacatgaatatcaacactaaaaaaacgaggtaaataattaattaattaat |
30950165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 30950176 - 30950144
Alignment:
| Q |
275 |
taattaattaattaatgttgtggtgatgtccat |
307 |
Q |
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| T |
30950176 |
taattaattaattaatgttgtggtgatgaccat |
30950144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 7472917 - 7472851
Alignment:
| Q |
56 |
atggcctaacctgtcaactgattgctctggctgaaatcaattccaaaaataagtttgggagattcaa |
122 |
Q |
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| T |
7472917 |
atggcctaacctgtccactcattgctcttggtgaaatcgattccaagaataagattggaagactcaa |
7472851 |
T |
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