View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_16 (Length: 303)
Name: NF8039_low_16
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 37986239 - 37986506
Alignment:
| Q |
1 |
tctctgacacatgttat-atataatgttggttctatttccatatttttaaaaacaattcagctttaaatttctcactttgtaaaattgctcnnnnnnnnn |
99 |
Q |
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| T |
37986239 |
tctctggcacatgttattatataatgtttgttctattttcatattttaaaaaacaattcagctttaaatttctcagtttctataattgca-ttttttttt |
37986337 |
T |
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| Q |
100 |
cattacaaagagggttaaaaatccgagaaaacaaatactacaccaaaattaacttagggaacgttccttttcgtagcagcaacaactaacaaatgactaa |
199 |
Q |
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| T |
37986338 |
cattacaaagagggttaaaaatccgagaaaagaaatactacaccaaaattaacttggggaacgttcctttttgcagtagcaacaactaacaaatgactaa |
37986437 |
T |
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| Q |
200 |
tttgagtccgacatgacttataataacaaataccataactcatagaacaacaaaaattgcatttttatt |
268 |
Q |
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| T |
37986438 |
attgagtccaacatgacttataataacaaataccataactcatagaacaacaaaaattgcatttttatt |
37986506 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 11784359 - 11784323
Alignment:
| Q |
186 |
taacaaatgactaatttgagtccgacatgacttataa |
222 |
Q |
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| T |
11784359 |
taacaaatgactaatttgagtcggacatgactcataa |
11784323 |
T |
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