View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_18 (Length: 264)
Name: NF8039_low_18
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1928028 - 1927810
Alignment:
| Q |
1 |
ttcactttaaagttttacagattttattgttctttagcagttttgtgcaagacannnnnnn-actaatatcatttttatgaagttataaagttttgtgca |
99 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
1928028 |
ttcactttaaagttttacagattttactgttctttagcagttttgtgcaagtcattttttttactaatatcatttttatgaagttataaagttttgtgca |
1927929 |
T |
|
| Q |
100 |
agcagtaaaatatgaacaatatcattaaaatataaaatataaaaatgccttgcacaagtcannnnnnnactaatatcatttctttagcagttttgttcaa |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
1927928 |
agcagtaaaatatgaacaatatcattaaaatataaaatataaaaatgccttgcacaagtcatttttttactaatatcatttcttcagcagttttgttcaa |
1927829 |
T |
|
| Q |
200 |
gcagtaaaaatgccttaca |
218 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
1927828 |
gcagtaaaaatgccttaca |
1927810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 30878312 - 30878508
Alignment:
| Q |
22 |
ttttattgttctttagcagttttgtgcaagacannnnnnnactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatat |
121 |
Q |
| |
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||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30878312 |
ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatat |
30878411 |
T |
|
| Q |
122 |
cattaaaatataaaatataaaaatgccttgcacaagtcannnnnnnactaatatcatttctttagcagttttgttcaagcagtaaaaatgccttaca |
218 |
Q |
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| T |
30878412 |
cattaaaatataaaatataaaaatgccttgcacaagtcatttttttactaatatcatttctttagcagttttgttcaagcagtaaaaatgccttaca |
30878508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 12847330 - 12847364
Alignment:
| Q |
214 |
ttacattaaatttgtttttaccaatctagaaaaaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
12847330 |
ttacattaaatttgtttttaccaatctagaaaaaa |
12847364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 20157379 - 20157186
Alignment:
| Q |
22 |
ttttattgttctttagcagttttgtgcaagacannnnnnnactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatat |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20157379 |
ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttttgtgcaatcagtaaaatatgaacaatat |
20157280 |
T |
|
| Q |
122 |
cattaaaatataaaatataaaaatgccttgcacaagtcannnnnnnactaatatcatttctttagcagttttgttcaagcagtaaaaatgcctt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20157279 |
cattaaaatataaaatataaaaatgccttgcacaagtcacttttttactaatatcatttctttagcagttttgttcaagcagtaaaaatgcctt |
20157186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34028581 - 34028362
Alignment:
| Q |
1 |
ttcactttaaagttttacagattttattgttctttagcagttttgtgcaagacannnnnnn-actaatatcatttttatgaagttataaagttttgtgca |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34028581 |
ttcactttaaagttttacagattttactgttctttagcagttttgtacaagtcattttttttactaatatcatttttatgaagttataaagttttgtgca |
34028482 |
T |
|
| Q |
100 |
agcagtaaaatatgaacaatatcattaaaatataaaatataaaaatgccttgcacaagtca-nnnnnnnactaatatcatttctttagcagttttgttca |
198 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
34028481 |
agcagtaaaatatgaacattatcattcaaatataaaatataaaaatgccttgcacaagtcattttttttactagtataatttctttagcagttttgttca |
34028382 |
T |
|
| Q |
199 |
agcagtaaaaatgccttaca |
218 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
34028381 |
agcagtaaaaatgtcttaca |
34028362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 40097556 - 40097751
Alignment:
| Q |
22 |
ttttattgttctttagcagttttgtgcaagacannnnnnnactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatat |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
40097556 |
ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttt-gtgcaatcagtaaaatatgaacaatat |
40097654 |
T |
|
| Q |
122 |
cattaaaatataaaatataaaaatgccttgcacaagtcannnnnnnactaatatcatttctttagcagttttgttcaagcagtaaaaatgccttaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
40097655 |
cattaaaatataaaatataaaaatgccttgcacaagtcatttttttactaatatcatttctttagcagttttgttcaagcaataaaaatgccttaca |
40097751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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