View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8039_low_19 (Length: 260)
Name: NF8039_low_19
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 24094872 - 24094630
Alignment:
| Q |
2 |
atcaacagaactagtcgattactcaatggagggaaatcaaaagaactacttgattactcactatgaagacgaaaataatattatattgacattatgcaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24094872 |
atcaacagaactagtcgattactcaatggagggaaatcaaaagaactacttgattactcactatgaagaagaaaataatattatattgacattatgcaaa |
24094773 |
T |
|
| Q |
102 |
aaacaattaaataagttccaagagggtgcttggtgcaatagatatctccattttatgatacaagtacctctatcttcttttgatacatcatacatggact |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24094772 |
aaacaattaaataagttccaagaaggtgcttggtgcaatagatatctcctttttatgatacaagtacctctatcttcttttgatacatcatacatggact |
24094673 |
T |
|
| Q |
202 |
actttaaaagagtaaactctttcctataaaattcaaacaccaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24094672 |
actttaaaagagtaaactctttcctataaaattcaaacaccaa |
24094630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University