View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_23 (Length: 238)
Name: NF8039_low_23
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34550928 - 34550706
Alignment:
| Q |
1 |
acgactggtaaaatgaaagtagtatctacctggcacgaattccgagatagagataaggacgatatgttccccaatacaaactctctttgtgctcaccttg |
100 |
Q |
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| T |
34550928 |
acgactggtaaaatgaaagtagtatctacctggcacgaattccgagatagagataaggacgatatgttccccaatacaaactctctttgtgctcaccttg |
34550829 |
T |
|
| Q |
101 |
aaactgcgacaacagtgaaactcgattcatacatataaatcaaattcatctaattctgacaaaaattaagagtgatgaaaaggatgaagttgaagttaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34550828 |
aaactgcgacaacagtgaaactcgattcatacatataaatcaaattcatctaattctgacaaaaattaagagtgatgaaaaggatgaagttgaagttaac |
34550729 |
T |
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| Q |
201 |
ctgatcgaggtccatgatctttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34550728 |
ctgatcgaggtccatgatctttg |
34550706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 34521764 - 34521662
Alignment:
| Q |
18 |
agtagtatctacctggcacgaattccgagatagagataaggacgatatgttccccaatacaaactctctttgtgctcaccttgaaactgcgacaacagtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || || |||||||||||||||||| |||||| || |
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| T |
34521764 |
agtagtatctacctggcacgaattccgagatagagatgaggacgataagttccccaatacaaactttccttatgctcaccttgaaactgcaacaacattg |
34521665 |
T |
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| Q |
118 |
aaa |
120 |
Q |
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||| |
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| T |
34521664 |
aaa |
34521662 |
T |
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