View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8039_low_25 (Length: 224)
Name: NF8039_low_25
Description: NF8039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8039_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 31645282 - 31645076
Alignment:
| Q |
1 |
agaagattaaatatgagaatcatggataaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaatagga |
100 |
Q |
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| T |
31645282 |
agaagattaaatatgagaatcgtggataaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaatagga |
31645183 |
T |
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| Q |
101 |
gattggaaagggaaaccaggaaagaaagaagaagatctgtgtatgctggaagatgagcatacatgtgagaacttatcagttgtccactaattaaaatagt |
200 |
Q |
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| T |
31645182 |
gattgaaaagggaaaccaggaaagaaagaagaagatctgtgtatgctggaagatgagcatacatgtgagaacttatcagttgtccactaattaaaatagt |
31645083 |
T |
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| Q |
201 |
acatagt |
207 |
Q |
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||||||| |
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| T |
31645082 |
acatagt |
31645076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 54173689 - 54173616
Alignment:
| Q |
28 |
aaatatctaaattgtgaatcaagatgaccaacaagacttaatgaagacaaagaacataatagatgaaataggag |
101 |
Q |
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|||||||||||||| |||||| |||||||| |||||| |||||||| |||| ||||| | |||||||||||| |
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| T |
54173689 |
aaatatctaaattgagaatcatgatgaccaccaagacagaatgaagatgaagaccataacaaatgaaataggag |
54173616 |
T |
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